fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04550.2 LPAESELELGLGLSLG at 18/173 in AT1G04550.1
LPAESELELGLGLSLG at 18/239 in AT1G04550.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt034336 YPVEAELELGLGLSLG in 42/277 AT2G33310.3 not_not 0.528089887 III
Pt034335 YPVEAELELGLGLSLG in 42/303 AT2G33310.3 not_not 0.521348314 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G04550.2     -MRG----------------------VSELEVGKSNLPAESELELGLGLSLGGG------
pt034336_POPTR_ MMEGCLGLLGGGGSSGASTNKSTLSKVEVIEAEASSYPVEAELELGLGLSLGSGGGGKGK
pt034335_POPTR_ MMEGCLGLLGGGGSSGASTNKSTLSKVEVIEAEASSYPVEAELELGLGLSLGSGGGGKGK
                 *.*                      *. :*.  *. *.*:***********.*      

AT1G04550.2     --AWKERGRILTAKDFPSV-----------------------GSKRSAESSSHQGASPPR
pt034336_POPTR_ ANAWGECGRILTAKDFPSV--------------------------RAADSVSHEGGSPTA
pt034335_POPTR_ ANAWGECGRILTAKDFPSVVSQPQRPNNNNSMPSTCVVGAVSGTKRAADSVSHEGGSPTA
                  ** * ************                          *:*:* **:*.**. 

AT1G04550.2     SSQVVGWPPIGLHRMNSLVNNQAMKAARAEE--GDGEKKVVKNDELKDVSMKVNPKVQG-
pt034336_POPTR_ GSQVVGWPPIRAYRMNSLV-SQA-KAARAEEEKGIGEKDKSKENLKKKICNGNKTNATGN
pt034335_POPTR_ GSQVVGWPPIRAYRMNSLV-SQA-KAARAEEEKGIGEKDKSKENLKKKICNGNKTNATGN
                .*********  :****** .** *******  * ***.  *::  *.:.   :.:. * 

AT1G04550.2     ----LGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKV---KPL--
pt034336_POPTR_ EKGHLGFVKVNMDGVPIGRKVDLNAHACYETLAQALEEMFF--RSTTTINSIGGQKPLSK
pt034335_POPTR_ EKGHLGFVKVNMDGVPIGRKVDLNAHACYETLAQALEEMFF--RSTTTINSIGGQKPLSK
                    *********** ******:.**:.**.***:******   .**  :.:   ***  

AT1G04550.2     --RLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKD
pt034336_POPTR_ FSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRLQDRNE
pt034335_POPTR_ FSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRLQDRNE
                  :******:******************** **:.******** ****.***** *::::

AT1G04550.2     RQRNNPV
pt034336_POPTR_ KQRSKPV
pt034335_POPTR_ KQRSKPV
                :**.:**
BoxShade v3.31 C (beta, 970507) Output
AT1G04550.2     - M R G - - - - - - - - - - - - - - - - - - - - - - V S E L E V G K S N L P A E S E L E L G L G L S L G G G - - - - - -
pt034336_POPTR_    M M E G C L G L L G G G G S S G A S T N K S T L S K V E V I E A E A S S Y P V E A E L E L G L G L S L G S G G G G K G K
pt034335_POPTR_    M M E G C L G L L G G G G S S G A S T N K S T L S K V E V I E A E A S S Y P V E A E L E L G L G L S L G S G G G G K G K
 
AT1G04550.2     - - A W K E R G R I L T A K D F P S V - - - - - - - - - - - - - - - - - - - - - - - G S K R S A E S S S H Q G A S P P R
pt034336_POPTR_    A N A W G E C G R I L T A K D F P S V - - - - - - - - - - - - - - - - - - - - - - - - - - R A A D S V S H E G G S P T A
pt034335_POPTR_    A N A W G E C G R I L T A K D F P S V V S Q P Q R P N N N N S M P S T C V V G A V S G T K R A A D S V S H E G G S P T A
 
AT1G04550.2     S S Q V V G W P P I G L H R M N S L V N N Q A M K A A R A E E - - G D G E K K V V K N D E L K D V S M K V N P K V Q G -
pt034336_POPTR_    G S Q V V G W P P I R A Y R M N S L V - S Q A - K A A R A E E E K G I G E K D K S K E N L K K K I C N G N K T N A T G N
pt034335_POPTR_    G S Q V V G W P P I R A Y R M N S L V - S Q A - K A A R A E E E K G I G E K D K S K E N L K K K I C N G N K T N A T G N
 
AT1G04550.2     - - - - L G F V K V N M D G V G I G R K V D M R A H S S Y E N L A Q T L E E M F F G M T G T T C R E K V - - - K P L - -
pt034336_POPTR_    E K G H L G F V K V N M D G V P I G R K V D L N A H A C Y E T L A Q A L E E M F F - - R S T T T I N S I G G Q K P L S K
pt034335_POPTR_    E K G H L G F V K V N M D G V P I G R K V D L N A H A C Y E T L A Q A L E E M F F - - R S T T T I N S I G G Q K P L S K
 
AT1G04550.2     - - R L L D G S S D F V L T Y E D K E G D W M L V G D V P W R M F I N S V K R L R I M G T S E A S G L A P R R Q E Q K D
pt034336_POPTR_    F S K L L D G S S E F V L T Y E D K E G D W M L V G D V P W G M F L T S V K R L R I M R T S E A N G L A P R L Q D R N E
pt034335_POPTR_    F S K L L D G S S E F V L T Y E D K E G D W M L V G D V P W G M F L T S V K R L R I M R T S E A N G L A P R L Q D R N E
 
AT1G04550.2     R Q R N N P V
pt034336_POPTR_    K Q R S K P V
pt034335_POPTR_    K Q R S K P V
 
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