fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04550.2 LPAESELELGLGLSLG at 18/173 in AT1G04550.1
LPAESELELGLGLSLG at 18/239 in AT1G04550.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt041570 YPVEAELELGLSLGSG in 43/282 AT2G33310.3 1st_not 0.534831460 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G04550.2     ------------------------MRGVSELEVGKSNLPAESELELGLGLSLGG------
pt041570_POPTR_ MMAGGLGSLGGGGGSSGASTNDSTMSKVEVVEAEASSYPVEAELELGLSLGSGGRGGGGG
                                        *  *. :*.  *. *.*:******.*. **      

AT1G04550.2     -----GAWKERGRILTAKDFPSVGSKRSAESSSHQGASPPRSSQVVGWPPIGLHRMNSLV
pt041570_POPTR_ GKGKANARGERGRILTAKDFPSV---RAADSVSHEGGSPTAGSQVVGWPPIRAYRMNSLV
                     .*  **************   *:*:* **:*.**. .*********  :******

AT1G04550.2     NNQAMKAARAEE--GDGEKKVVKNDELKDV------SMKVNPKVQGLGFVKVNMDGVGIG
pt041570_POPTR_ -NQA-KAARAEEDKGIGEKDISKDNLKKKICNGNKTSAPSNEKGH-LGFVKVNMDGIPIG
                 *** *******  * ***.: *::  *.:      *   * * : **********: **

AT1G04550.2     RKVDMRAHSSYENLAQTLEEMFFGMTGTTC-------REKVKPLRLLDGSSDFVLTYEDK
pt041570_POPTR_ RKVDLNAHACYETLAQALEEMFF-RSATTINSIGGEKRQVTKPSKLLDGLSEFLLTYEDK
                ****:.**:.**.***:******  :.**        *: .** :**** *:*:******

AT1G04550.2     EGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRNNPV
pt041570_POPTR_ EGDWMLVGDVPWGMFLNSVKRLRIMRTSEANGLAPRFQDRNEKQRIKPV
                ************ **:********* ****.***** *:::::** :**
BoxShade v3.31 C (beta, 970507) Output
AT1G04550.2     - - - - - - - - - - - - - - - - - - - - - - - - M R G V S E L E V G K S N L P A E S E L E L G L G L S L G G - - - - - -
pt041570_POPTR_    M M A G G L G S L G G G G G S S G A S T N D S T M S K V E V V E A E A S S Y P V E A E L E L G L S L G S G G R G G G G G
 
AT1G04550.2     - - - - - G A W K E R G R I L T A K D F P S V G S K R S A E S S S H Q G A S P P R S S Q V V G W P P I G L H R M N S L V
pt041570_POPTR_    G K G K A N A R G E R G R I L T A K D F P S V - - - R A A D S V S H E G G S P T A G S Q V V G W P P I R A Y R M N S L V
 
AT1G04550.2     N N Q A M K A A R A E E - - G D G E K K V V K N D E L K D V - - - - - - S M K V N P K V Q G L G F V K V N M D G V G I G
pt041570_POPTR_    - N Q A - K A A R A E E D K G I G E K D I S K D N L K K K I C N G N K T S A P S N E K G H - L G F V K V N M D G I P I G
 
AT1G04550.2     R K V D M R A H S S Y E N L A Q T L E E M F F G M T G T T C - - - - - - - R E K V K P L R L L D G S S D F V L T Y E D K
pt041570_POPTR_    R K V D L N A H A C Y E T L A Q A L E E M F F - R S A T T I N S I G G E K R Q V T K P S K L L D G L S E F L L T Y E D K
 
AT1G04550.2     E G D W M L V G D V P W R M F I N S V K R L R I M G T S E A S G L A P R R Q E Q K D R Q R N N P V
pt041570_POPTR_    E G D W M L V G D V P W G M F L N S V K R L R I M R T S E A N G L A P R F Q D R N E K Q R I K P V
 
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