fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G05710.3 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm019001 not found in 167aa AT1G05710.3 not_1st 0.594594594 II
Gm003958 not found in 165aa AT1G05710.3 not_1st 0.570945945 II
Pt015027 not found in 143aa AT1G05710.3 not_1st 0.618243243 II
Pt013129 not found in 143aa AT1G05710.3 not_1st 0.581081081 II
Sm009212 not found in 108aa AT3G19500.1 1st_not 0.408783783 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G05710.3     ----------MEFSRDAGM----MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKD
pt013129_POPTR_ -----------------------MMENKRSPCSVDHGTLTSLATKRHKADFSISTKERKE
pt015027_POPTR_ -----------------------MMENKRSPCSVDHASLTSLATKRHKADFSISTKERKE
gm003958_Glyma0 MIASSFCNADSMFSREEGIDVRKMMEHKRRPCSVDQSSYTSIASKRQKADLSISTKERKE
gm019001_Glyma0 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKE
Sm009212_Selmo1 -------------------------------------------------EMEMQMQVRKE
                                                                 ::.:. : **:

AT1G05710.3     KVGERISALQQIVSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVP-DATQEELE
pt013129_POPTR_ KLGERIVALQQLVSPYGKTDTASVLMEAMEYIRFLHEQVQVLSAPYLQGTS-TAQMQGLG
pt015027_POPTR_ KLGERIVALQQLVSPYGKTDTASVLMEAMEYIRFLHEQVQVLSAPYLQGTS-TAQMQELG
gm003958_Glyma0 KIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQ--LLSAPYLESSP-AAKMQGVE
gm019001_Glyma0 KIGKRIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLESSP-AAKMQGME
Sm009212_Selmo1 KLGERISALQQLVSPFGKTDTASVLLEAIGYIKFLHEQVQVLSSPYMKPAGVSTTTRQTD
                *:*:** ****:***:*****:*** :*: ** ***:*  :**:**::     :  .   

AT1G05710.3     QYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAFSVTSQSPFR
pt013129_POPTR_ QHSLESKGLCLVPISYTAGIARSNGADIWAPIK-SPSPKCN-KSISQFH
pt015027_POPTR_ QYSLRNKGLCLVPTSCTAGIARSNGADIWAPIK-SPSPKFN-KDVSPFH
gm003958_Glyma0 PCSLRSRGLCLVPVSVTIGVAESNGADIWAPIKTTTSPKFE-KDVSQFH
gm019001_Glyma0 PCSLRSRGLCLVPVSFTIGVAETNGADIWAPIKTTTSPKFE-KDVSQFH
Sm009212_Selmo1 RQDLRSRGLCLVPVSCTLQVANDNGADYWAPTLHGLK------------
                  .*..:****** . *  :*. **** ***     .
BoxShade v3.31 C (beta, 970507) Output
AT1G05710.3     - - - - - - - - - - M E F S R D A G M - - - - M M E N K R N V C S L G E S S I - - - - - K R H K S D L S F S S K E R K D
pt013129_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - M M E N K R S P C S V D H G T L T S L A T K R H K A D F S I S T K E R K E
pt015027_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - M M E N K R S P C S V D H A S L T S L A T K R H K A D F S I S T K E R K E
gm003958_Glyma0    M I A S S F C N A D S M F S R E E G I D V R K M M E H K R R P C S V D Q S S Y T S I A S K R Q K A D L S I S T K E R K E
gm019001_Glyma0    M I A S S F C N A D S M F S R E E G I D V R K M M E H K R S P C S V D Q S S Y T S I A S K R Q K A D L S I S T K E R K E
Sm009212_Selmo1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E M E M Q M Q V R K E
 
AT1G05710.3     K V G E R I S A L Q Q I V S P Y G K T D T A S V L L D A M H Y I E F L H E Q V K V L S A P Y L Q T V P - D A T Q E E L E
pt013129_POPTR_    K L G E R I V A L Q Q L V S P Y G K T D T A S V L M E A M E Y I R F L H E Q V Q V L S A P Y L Q G T S - T A Q M Q G L G
pt015027_POPTR_    K L G E R I V A L Q Q L V S P Y G K T D T A S V L M E A M E Y I R F L H E Q V Q V L S A P Y L Q G T S - T A Q M Q E L G
gm003958_Glyma0    K I G E R I V A L Q Q L V S P Y G K T D T S S V L K E A M E Y I G F L H K Q - - L L S A P Y L E S S P - A A K M Q G V E
gm019001_Glyma0    K I G K R I V A L Q Q L V S P Y G K T D T S S V L K E A M E Y I G F L H K Q V K L L S A P Y L E S S P - A A K M Q G M E
Sm009212_Selmo1    K L G E R I S A L Q Q L V S P F G K T D T A S V L L E A I G Y I K F L H E Q V Q V L S S P Y M K P A G V S T T T R Q T D
 
AT1G05710.3     Q Y S L R N R G L C L V P M E N T V G V A Q S N G A D I W A P V K T P L S P A F S V T S Q S P F R
pt013129_POPTR_    Q H S L E S K G L C L V P I S Y T A G I A R S N G A D I W A P I K - S P S P K C N - K S I S Q F H
pt015027_POPTR_    Q Y S L R N K G L C L V P T S C T A G I A R S N G A D I W A P I K - S P S P K F N - K D V S P F H
gm003958_Glyma0    P C S L R S R G L C L V P V S V T I G V A E S N G A D I W A P I K T T T S P K F E - K D V S Q F H
gm019001_Glyma0    P C S L R S R G L C L V P V S F T I G V A E T N G A D I W A P I K T T T S P K F E - K D V S Q F H
Sm009212_Selmo1    R Q D L R S R G L C L V P V S C T L Q V A N D N G A D Y W A P T L H G L K - - - - - - - - - - - -
 
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