fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G05710.3 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os017881 not found in 156aa AT1G05710.3 1st_1st 0.466216216 Ia
Gm003956 not found in 167aa AT1G05710.3 1st_1st 0.601351351 Ia
Pt015028 not found in 143aa AT1G05710.3 1st_1st 0.618243243 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G05710.3     ----------MEFSRDAGM----MM-----ENKRN--------VCSLGESSI-------K
pt015028_POPTR_ -----------------------MM-----ENKRS--------PCSVDHASLT--SLATK
Os017881_Os04t0 ------------------M----MMTEVANHSKRNHNESYFTGKAAVTSSSEEFGSMTSK
gm003956_Glyma0 MIASSFCNADSMFSREEGIDVRKMM-----EHKRR--------PCSVDQSSYT--SIASK
                                       **     . **          .::  :*        *

AT1G05710.3     RHKS----DLSFSSKERKDKVGERISALQQIVSPYGKTDTASVLLDAMHYIEFLHEQVKV
pt015028_POPTR_ RHKA----DFSISTKERKEKLGERIVALQQLVSPYGKTDTASVLMEAMEYIRFLHEQVQV
Os017881_Os04t0 KPRNTSPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEV
gm003956_Glyma0 RQKA----DLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKL
                : :     * ..*.**:*:*:***: ****:***:*****:*** :*  ** ***:*:::

AT1G05710.3     LSAPYLQT--VPDATQEELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAF
pt015028_POPTR_ LSAPYLQG--TSTAQMQELGQYSLRNKGLCLVPTSCTAGIARSNGADIWAPIK-SPSPKF
Os017881_Os04t0 LSSPYMRAPPVPGAAPEDPDHYSLRNRGLCLVPVDQTLQLTQSNGADLWAPANTTRRR--
gm003956_Glyma0 LSAPYLES--SPAAKMQGVEPCSLRSRGLCLVPVSVTIGVAESNGADIWAPIKTTTSPKF
                **:**:.    . *  :     ***.:****** . *  ::.*****:*** : .     

AT1G05710.3     SVTSQSPFR
pt015028_POPTR_ N-KDVSPFH
Os017881_Os04t0 ---------
gm003956_Glyma0 E-KDVSQFH
BoxShade v3.31 C (beta, 970507) Output
AT1G05710.3     - - - - - - - - - - M E F S R D A G M - - - - M M - - - - - E N K R N - - - - - - - - V C S L G E S S I - - - - - - - K
pt015028_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - M M - - - - - E N K R S - - - - - - - - P C S V D H A S L T - - S L A T K
Os017881_Os04t0    - - - - - - - - - - - - - - - - - - M - - - - M M T E V A N H S K R N H N E S Y F T G K A A V T S S S E E F G S M T S K
gm003956_Glyma0    M I A S S F C N A D S M F S R E E G I D V R K M M - - - - - E H K R R - - - - - - - - P C S V D Q S S Y T - - S I A S K
 
AT1G05710.3     R H K S - - - - D L S F S S K E R K D K V G E R I S A L Q Q I V S P Y G K T D T A S V L L D A M H Y I E F L H E Q V K V
pt015028_POPTR_    R H K A - - - - D F S I S T K E R K E K L G E R I V A L Q Q L V S P Y G K T D T A S V L M E A M E Y I R F L H E Q V Q V
Os017881_Os04t0    K P R N T S P R D A P V S P K E K K D K I G E R V A A L Q Q L V S P F G K T D T A S V L Q E A S G Y I K F L H Q Q L E V
gm003956_Glyma0    R Q K A - - - - D L S I S T K E R K E K I G E R I V A L Q Q L V S P Y G K T D T S S V L K E A M E Y I G F L H K Q V K L
 
AT1G05710.3     L S A P Y L Q T - - V P D A T Q E E L E Q Y S L R N R G L C L V P M E N T V G V A Q S N G A D I W A P V K T P L S P A F
pt015028_POPTR_    L S A P Y L Q G - - T S T A Q M Q E L G Q Y S L R N K G L C L V P T S C T A G I A R S N G A D I W A P I K - S P S P K F
Os017881_Os04t0    L S S P Y M R A P P V P G A A P E D P D H Y S L R N R G L C L V P V D Q T L Q L T Q S N G A D L W A P A N T T R R R - -
gm003956_Glyma0    L S A P Y L E S - - S P A A K M Q G V E P C S L R S R G L C L V P V S V T I G V A E S N G A D I W A P I K T T T S P K F
 
AT1G05710.3     S V T S Q S P F R
pt015028_POPTR_    N - K D V S P F H
Os017881_Os04t0    - - - - - - - - -
gm003956_Glyma0    E - K D V S Q F H
 
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