fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G05710.3 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt015028 not found in 143aa AT1G05710.3 1st_1st 0.618243243 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G05710.3     MEFSRDAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVS
pt015028_POPTR_ ---------MMENKRSPCSVDHASLTSLATKRHKADFSISTKERKEKLGERIVALQQLVS
                         ******. **:..:*:     ****:*:*:*:****:*:**** ****:**

AT1G05710.3     PYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELEQYSLRNRGLCLVPME
pt015028_POPTR_ PYGKTDTASVLMEAMEYIRFLHEQVQVLSAPYLQGTSTAQMQELGQYSLRNKGLCLVPTS
                ***********::**.**.******:******** .. *  :** ******:****** .

AT1G05710.3     NTVGVAQSNGADIWAPVKTPLSPAFSVTSQSPFR
pt015028_POPTR_ CTAGIARSNGADIWAPIKSP-SPKFN-KDVSPFH
                 *.*:*:*********:*:* ** *. .. ***:
BoxShade v3.31 C (beta, 970507) Output
AT1G05710.3     M E F S R D A G M M M E N K R N V C S L G E S S I - - - - - K R H K S D L S F S S K E R K D K V G E R I S A L Q Q I V S
pt015028_POPTR_    - - - - - - - - - M M E N K R S P C S V D H A S L T S L A T K R H K A D F S I S T K E R K E K L G E R I V A L Q Q L V S
 
AT1G05710.3     P Y G K T D T A S V L L D A M H Y I E F L H E Q V K V L S A P Y L Q T V P D A T Q E E L E Q Y S L R N R G L C L V P M E
pt015028_POPTR_    P Y G K T D T A S V L M E A M E Y I R F L H E Q V Q V L S A P Y L Q G T S T A Q M Q E L G Q Y S L R N K G L C L V P T S
 
AT1G05710.3     N T V G V A Q S N G A D I W A P V K T P L S P A F S V T S Q S P F R
pt015028_POPTR_    C T A G I A R S N G A D I W A P I K S P - S P K F N - K D V S P F H
 
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