fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G06160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052299 not found in 174aa AT2G31230.1 1st_not 0.454237288 II
Pt002978 not found in 228aa AT3G23240.1 1st_not 0.450847457 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G06160.1     ME----YQTNFLSGEFSPENSSSSSWSSQESFLWEESFLHQSFDQSFLLSSPTDNYCDDF
gm052299_Glyma1 ------------------------------------------------------------
pt002978_POPTR_ MESSLFYHDQYLNSDFSPE----CSFGSLDSFSWDE-LLFQSNSLPF-----NTNDSEEM
                                                                            

AT1G06160.1     FAF------------------ESSIIKEEGKEATVAAEEE---EKSYRGVRKRPWGKFAA
gm052299_Glyma1 -MFPVLLVASKGQSVSLSLSSSSSSLP-------LLPSQQAKEQKMYRGVRKRPWGKFAA
pt002978_POPTR_ VLFNAL---ANGPPKESSESNSSSGIKEEEVTSNAKEEEEAKREKSYRGVRRRPWGKYAA
                  *                  .** :           .::   :* *****:*****:**

AT1G06160.1     EIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNL
gm052299_Glyma1 EIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVSESLKDMPSKPW
pt002978_POPTR_ EIRDSTRNGIRVWLGTFDSAEAAALAYDQAAFSMRGSMAVLNFPVEMVRESLQDMNYR-C
                *******:*:***:****:*************: :**:****** ::* ***:.*     

AT1G06160.1     NDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSV
gm052299_Glyma1 EEGSSPVLALKRKHTMRRKSNSKKKSKIDQR-----------------EQLDFSSSSQNV
pt002978_POPTR_ EDGCSPVVALKRKHSMRRKSKS-WKTKVNQV-----------------PH----SRPQNV
                ::* ***:******:**.:...  *:. ..                        *  *.*

AT1G06160.1     VMTQESNTTLVVLEDLGAEYLEELMRSCS-----
gm052299_Glyma1 ----------LVFEDLGAEYLEQLLSL--TS---
pt002978_POPTR_ ----------VVLEDLGADYLEELLNSCDTSNSW
                          :*:*****:***:*:
BoxShade v3.31 C (beta, 970507) Output
AT1G06160.1     M E - - - - Y Q T N F L S G E F S P E N S S S S S W S S Q E S F L W E E S F L H Q S F D Q S F L L S S P T D N Y C D D F
gm052299_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt002978_POPTR_    M E S S L F Y H D Q Y L N S D F S P E - - - - C S F G S L D S F S W D E - L L F Q S N S L P F - - - - - N T N D S E E M
 
AT1G06160.1     F A F - - - - - - - - - - - - - - - - - - E S S I I K E E G K E A T V A A E E E - - - E K S Y R G V R K R P W G K F A A
gm052299_Glyma1    - M F P V L L V A S K G Q S V S L S L S S S S S S L P - - - - - - - L L P S Q Q A K E Q K M Y R G V R K R P W G K F A A
pt002978_POPTR_    V L F N A L - - - A N G P P K E S S E S N S S S G I K E E E V T S N A K E E E E A K R E K S Y R G V R R R P W G K Y A A
 
AT1G06160.1     E I R D S T R K G I R V W L G T F D T A E A A A L A Y D Q A A F A L K G S L A V L N F P A D V V E E S L R K M E N V N L
gm052299_Glyma1    E I R D S T R N G V R V W I G T F D T A E A A A L A Y D Q A A F S T R G S L A V L N F P E E V V S E S L K D M P S K P W
pt002978_POPTR_    E I R D S T R N G I R V W L G T F D S A E A A A L A Y D Q A A F S M R G S M A V L N F P V E M V R E S L Q D M N Y R - C
 
AT1G06160.1     N D G E S P V I A L K R K H S M R N R P R G K K K S S S S S T L T S S P S S S S S Y S S S S S S S S L S S R S R K Q S V
gm052299_Glyma1    E E G S S P V L A L K R K H T M R R K S N S K K K S K I D Q R - - - - - - - - - - - - - - - - - E Q L D F S S S S Q N V
pt002978_POPTR_    E D G C S P V V A L K R K H S M R R K S K S - W K T K V N Q V - - - - - - - - - - - - - - - - - P H - - - - S R P Q N V
 
AT1G06160.1     V M T Q E S N T T L V V L E D L G A E Y L E E L M R S C S - - - - -
gm052299_Glyma1    - - - - - - - - - - L V F E D L G A E Y L E Q L L S L - - T S - - -
pt002978_POPTR_    - - - - - - - - - - V V L E D L G A D Y L E E L L N S C D T S N S W
 
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