fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G06280.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm033488 not found in 131aa AT1G06280.1 1st_1st 0.426229508 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G06280.1     MMQRNSNNTSITSNISNNSSSHQACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVF
gm033488_Glyma1 --------------------MHPACAACKHQRKKCSENCILEPYFPSNRSREFYAVHKVF
                                     * ***:********.::***.****:.:::** ******

AT1G06280.1     GVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYG-------EYRRICEELKLY
gm033488_Glyma1 GVSNITKLVKNAKEEDRRKVVDSLIWEACCRQRDPIQGPYGEYTKVYNEYKKVLDEIKRF
                ****: *:*:..:**** *: *** ***  **:**: *.**       **::: :*:* :

AT1G06280.1     KSLVHNQ----PLIGWDNNQRVFNNNSNNKNGLAMTNSSGSGGFSVNNNGVGVNREIVNG
gm033488_Glyma1 RS--QNQLLQIPSLGFKSVQDLIACN-------------GTKG-----------------
                :*  :**    * :*:.. * ::  *             *: *                 

AT1G06280.1     GYASRNVQGGWENLKHDQRQQCYAVINNGFKQHYLPL
gm033488_Glyma1 --------------EHK--------------------
                              :*.
BoxShade v3.31 C (beta, 970507) Output
AT1G06280.1     M M Q R N S N N T S I T S N I S N N S S S H Q A C A S C K H Q R K K C N N E C I L S P Y F P A R K T K E F Q A V H K V F
gm033488_Glyma1    - - - - - - - - - - - - - - - - - - - - M H P A C A A C K H Q R K K C S E N C I L E P Y F P S N R S R E F Y A V H K V F
 
AT1G06280.1     G V S N V Q K M V R T V R E E D R T K L S D S L T W E A L W R Q K D P V L G S Y G - - - - - - - E Y R R I C E E L K L Y
gm033488_Glyma1    G V S N I T K L V K N A K E E D R R K V V D S L I W E A C C R Q R D P I Q G P Y G E Y T K V Y N E Y K K V L D E I K R F
 
AT1G06280.1     K S L V H N Q - - - - P L I G W D N N Q R V F N N N S N N K N G L A M T N S S G S G G F S V N N N G V G V N R E I V N G
gm033488_Glyma1    R S - - Q N Q L L Q I P S L G F K S V Q D L I A C N - - - - - - - - - - - - - G T K G - - - - - - - - - - - - - - - - -
 
AT1G06280.1     G Y A S R N V Q G G W E N L K H D Q R Q Q C Y A V I N N G F K Q H Y L P L
gm033488_Glyma1    - - - - - - - - - - - - - - E H K - - - - - - - - - - - - - - - - - - - -
 
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