fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G08465.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm034118 not found in 181aa AT1G08465.1 1st_1st 0.607329842 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G08465.1     MSVD-FSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA
gm034118_Glyma1 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASL-QTF-
                **:* :::********.**.* ****** :**:*:********:***::*:*.** **  

AT1G08465.1     PPIHQDLQPHRQH-TTSLVTRKDCASSSRSTNNLSENIDRE-APRMPPIRPPEKRQRVPS
gm034118_Glyma1 -PSQDTTQLQRQHLSVQEACSKELGSSSKCKS--FETVDHEQQPRIPPIRPPEKRQRVPS
                 * ::  * :*** :.. .  *: .***:...   *.:*:*  **:**************

AT1G08465.1     AYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVAG
gm034118_Glyma1 AYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDQGDGT
                ***************.**:******************************:.* ***. . 

AT1G08465.1     QKSNGYY
gm034118_Glyma1 QKSNGFY
                *****:*
BoxShade v3.31 C (beta, 970507) Output
AT1G08465.1     M S V D - F S S E R V C Y V H C S F C T T I L A V S V P Y A S L F T L V T V R C G H C T N L L S L N I G V S L H Q T S A
gm034118_Glyma1    M S M D M M A T E R V C Y V H C N F C N T T L A V S V P C S S L L T I V T V R C G H C A N L L T V N M G A S L - Q T F -
 
AT1G08465.1     P P I H Q D L Q P H R Q H - T T S L V T R K D C A S S S R S T N N L S E N I D R E - A P R M P P I R P P E K R Q R V P S
gm034118_Glyma1    - P S Q D T T Q L Q R Q H L S V Q E A C S K E L G S S S K C K S - - F E T V D H E Q Q P R I P P I R P P E K R Q R V P S
 
AT1G08465.1     A Y N R F I K E E I Q R I K A C N P E I S H R E A F S T A A K N W A H F P H I H F G L K L D G N K K G K Q L D Q S V A G
gm034118_Glyma1    A Y N R F I K E E I Q R I K A S N P D I S H R E A F S T A A K N W A H F P H I H F G L K L D G N K Q A K - L D Q G D G T
 
AT1G08465.1     Q K S N G Y Y
gm034118_Glyma1    Q K S N G F Y
 
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