fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G09030.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055621 not found in 150aa AT1G09030.1 1st_1st 0.581560283 Ia
Pt001709 not found in 149aa AT1G09030.1 1st_1st 0.599290780 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G09030.1     MTDE--DRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHREN
gm055621_Glyma2 MDQDVQDRALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKEN
pt001709_POPTR_ MDDE-QDRLLPIANVGRMMKKILPPTAKISKEAKQTMQECATEFVSFVTGEASDKCQKEN
                * ::  ** ********:**:***..******.** :***.***:**** ***:**::**

AT1G09030.1     RKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERT--EHNKGSNDSGNEKETNTR
gm055621_Glyma2 RKTVNGDDICWALSSLGFDNYAEAIGRYLHIYRQGEREKI--NHTKKYENPQNQTQIN-R
pt001709_POPTR_ RKTVNGDDICWALISLGFDDHAEAMVRYLHKYREAERERSTNQHKASGTDQGEESNHESK
                ********* *** :**:*::*:*: *:** **:.***:   :*.    :  ::.: : :

AT1G09030.1     SDVQ---------NQS--TKFIR-VVEKGSSSSAR---
gm055621_Glyma2 APPPPLLLSRRSYTQGLVTEFNKPIMESSNSGN-----
pt001709_POPTR_ QPKQPI----EAPNNG--VEF-R-VLEKGNSSSFTNPS
                             .:.  .:* : ::*...*..
BoxShade v3.31 C (beta, 970507) Output
AT1G09030.1     M T D E - - D R L L P I A N V G R L M K Q I L P S N A K I S K E A K Q T V Q E C A T E F I S F V T C E A S E K C H R E N
gm055621_Glyma2    M D Q D V Q D R A L P I A N V G R I M K Q I L P P S A K I S K E G K Q L M Q E C V T E F I S F V T G E A S D K C H K E N
pt001709_POPTR_    M D D E - Q D R L L P I A N V G R M M K K I L P P T A K I S K E A K Q T M Q E C A T E F V S F V T G E A S D K C Q K E N
 
AT1G09030.1     R K T V N G D D I W W A L S T L G L D N Y A D A V G R H L H K Y R E A E R E R T - - E H N K G S N D S G N E K E T N T R
gm055621_Glyma2    R K T V N G D D I C W A L S S L G F D N Y A E A I G R Y L H I Y R Q G E R E K I - - N H T K K Y E N P Q N Q T Q I N - R
pt001709_POPTR_    R K T V N G D D I C W A L I S L G F D D H A E A M V R Y L H K Y R E A E R E R S T N Q H K A S G T D Q G E E S N H E S K
 
AT1G09030.1     S D V Q - - - - - - - - - N Q S - - T K F I R - V V E K G S S S S A R - - -
gm055621_Glyma2    A P P P P L L L S R R S Y T Q G L V T E F N K P I M E S S N S G N - - - - -
pt001709_POPTR_    Q P K Q P I - - - - E A P N N G - - V E F - R - V L E K G N S S S F T N P S
 
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