fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G12260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm047021 not found in 366aa AT1G12260.1 1st_1st 0.559493670 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G12260.1     MNSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGH
gm047021_Glyma1 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGT
                **:******************.************::*.***:***************** 

AT1G12260.1     EEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRA
gm047021_Glyma1 DEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRA
                :**************************************** :*.***************

AT1G12260.1     PNGQKSDWIMHEYRLETDENG-TPQEEGWVVCRVFKKRLAAVRRMGDYDSSPSHWYDDQL
gm047021_Glyma1 PNGQKSDWIMHEYRLETNENGTTSQEEGWVVCRVFKKRMTTMQKVGEYDQSPC-WYDEQV
                *****************:*** *.**************:::::::*:**.**. ***:*:

AT1G12260.1     SFMASELETNGQRRILPNHHQQQQHEHQQHMPYGLNASAYALNNPNLQCKQEL-ELHYNH
gm047021_Glyma1 SFM-QDLESPRRSISLP-----YASYHHHHHP---------------SCKPELMELQYNN
                *** .:**:  :   **         *::* *               .** ** **:**:

AT1G12260.1     LVQRNHLLDESHLSFLQLPQLESPKIQQDNSNCNSLPYGTSNIDNNSSHN--ANLQQSNI
gm047021_Glyma1 I---------PHDAFLQLPQLESPKVTQ--SACSVVPYGYENNNNNNNNNNGSTLQFSSL
                :         .* :***********: *  * *. :*** .* :**..:*  :.** *.:

AT1G12260.1     AHEEQLNQGN--QNFSSLYMNSGNEQVMDQVTDWRVLDKFVASQLS--NEEAATASASIQ
gm047021_Glyma1 TQEEQLQYCNNQQSHHSLY--GSNDHAVDQVTDWRVLDKYVASQLSHNNQDVVSKETSYS
                ::****:  *  *.. ***  ..*::.:***********:******  *::..: .:* .

AT1G12260.1     NNAKDTSNAEYQVDEEKDPKRASDMGEEYTASTSSSCQIDLWK
gm047021_Glyma1 N--APIFNVTEQVSVVANGSKKEQVSQEYASTSTSSYQIDLWK
                *      *.  **.   : .: .::.:**:::::** ******
BoxShade v3.31 C (beta, 970507) Output
AT1G12260.1     M N S F S H V P P G F R F H P T D E E L V D Y Y L R K K V A S K R I E I D F I K D I D L Y K I E P W D L Q E L C K I G H
gm047021_Glyma1    M N T F S H V P P G F R F H P T D E E L V G Y Y L R K K V A S K R I D L D V I K D V D L Y K I E P W D L Q E L C K I G T
 
AT1G12260.1     E E Q S D W Y F F S H K D K K Y P T G T R T N R A T K A G F W K A T G R D K A I Y L R H S L I G M R K T L V F Y K G R A
gm047021_Glyma1    D E Q S D W Y F F S H K D K K Y P T G T R T N R A T K A G F W K A T G R D K A I Y S K H C L I G M R K T L V F Y K G R A
 
AT1G12260.1     P N G Q K S D W I M H E Y R L E T D E N G - T P Q E E G W V V C R V F K K R L A A V R R M G D Y D S S P S H W Y D D Q L
gm047021_Glyma1    P N G Q K S D W I M H E Y R L E T N E N G T T S Q E E G W V V C R V F K K R M T T M Q K V G E Y D Q S P C - W Y D E Q V
 
AT1G12260.1     S F M A S E L E T N G Q R R I L P N H H Q Q Q Q H E H Q Q H M P Y G L N A S A Y A L N N P N L Q C K Q E L - E L H Y N H
gm047021_Glyma1    S F M - Q D L E S P R R S I S L P - - - - - Y A S Y H H H H H P - - - - - - - - - - - - - - - S C K P E L M E L Q Y N N
 
AT1G12260.1     L V Q R N H L L D E S H L S F L Q L P Q L E S P K I Q Q D N S N C N S L P Y G T S N I D N N S S H N - - A N L Q Q S N I
gm047021_Glyma1    I - - - - - - - - - P H D A F L Q L P Q L E S P K V T Q - - S A C S V V P Y G Y E N N N N N N N N N N G S T L Q F S S L
 
AT1G12260.1     A H E E Q L N Q G N - - Q N F S S L Y M N S G N E Q V M D Q V T D W R V L D K F V A S Q L S - - N E E A A T A S A S I Q
gm047021_Glyma1    T Q E E Q L Q Y C N N Q Q S H H S L Y - - G S N D H A V D Q V T D W R V L D K Y V A S Q L S H N N Q D V V S K E T S Y S
 
AT1G12260.1     N N A K D T S N A E Y Q V D E E K D P K R A S D M G E E Y T A S T S S S C Q I D L W K
gm047021_Glyma1    N - - A P I F N V T E Q V S V V A N G S K K E Q V S Q E Y A S T S T S S Y Q I D L W K
 
0