fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G12630.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb002691 not found in 257aa AT1G12630.1 1st_1st 0.423236514 Ia
Gm046959 not found in 165aa AT1G12630.1 1st_1st 0.477178423 Ia
Pt012166 not found in 176aa AT1G12630.1 1st_1st 0.502074688 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G12630.1     MNSSMASAGL--------------------------------------------------
Sb002691_Sorbi1 ----MAVAVAVVSGTGIAHLHFLHVLLPEIPGFSGEEQRGSVPVCPECPGQMEREQEQEA
pt012166_POPTR_ ----MATTSS--------------------------------------------------
gm046959_Glyma1 ----MA-SSS--------------------------------------------------
                    ** :                                                    

AT1G12630.1     ------------GSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYD
Sb002691_Sorbi1 GTAQQLLGRRVRADTRH-PVYRGIRYRGGKWVSEIREPRKSNRIWLGTYPAPEMAAAAYD
pt012166_POPTR_ ------------SSKRH-PMYRGIRSRSGKWVSEIREPRKTTRIWLGTFPKPEMAAAAYD
gm046959_Glyma1 ------------SSKRH-PLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYD
                            .. *: *:*:*** *.****:*******:.******:  .********

AT1G12630.1     VAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAM---------KGCEEGEE
Sb002691_Sorbi1 AAALALRGAEAALNFPGAAMSRPAPASCSPDDIRAAAAAAAAAVIGRSHSPQVGGEAAAG
pt012166_POPTR_ VAVLALKGADAVLNFPSSVGTYPVPASTSPTDIRNAANAAAAL---------KKAEMSYN
gm046959_Glyma1 VAALALKGNEAVLNFPDSVGRYPVPASNSPSDIRFAAIAAAEL---------MKPEANNN
                .*.:**:* :*.****.:.   *.* * *. *** ** ***              *    

AT1G12630.1     EKKAKEKKSSSSKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPP
Sb002691_Sorbi1 GGCGASTWSSGAGAQGQ-------VPEHRAGDRRIVDEDDVFQVPRLLAGMAEGLMMSPP
pt012166_POPTR_ EALVEQPRNDCAVGT---------FLASG--GEEFVDEEALFDMPNLLVDMAGGMLLSPP
gm046959_Glyma1 NNVNASTTNNAAVQSD-----SNDVLPSF--ETEFMDEEAIFSMPSLLVDMAGGMLLSPP
                     .  .. :            .        .::**: ::.:* **..** *::::**

AT1G12630.1     SWMGSRPSD-----DSPENSND-EDLWGY-
Sb002691_Sorbi1 RLVGP-ATDGAVLLEEDGSEDGVVSLWDHS
pt012166_POPTR_ R-ITPSPSD-----DSQGTSDG-ESLWSYS
gm046959_Glyma1 R-MSP-PSD-----NE--------------
                  : . .:*     :.
BoxShade v3.31 C (beta, 970507) Output
AT1G12630.1     M N S S M A S A G L - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Sb002691_Sorbi1    - - - - M A V A V A V V S G T G I A H L H F L H V L L P E I P G F S G E E Q R G S V P V C P E C P G Q M E R E Q E Q E A
pt012166_POPTR_    - - - - M A T T S S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm046959_Glyma1    - - - - M A - S S S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT1G12630.1     - - - - - - - - - - - - G S R R K D P V Y R G I R C R S G K W V S E I R E P R K T T R I W L G T Y P M A E M A A A A Y D
Sb002691_Sorbi1    G T A Q Q L L G R R V R A D T R H - P V Y R G I R Y R G G K W V S E I R E P R K S N R I W L G T Y P A P E M A A A A Y D
pt012166_POPTR_    - - - - - - - - - - - - S S K R H - P M Y R G I R S R S G K W V S E I R E P R K T T R I W L G T F P K P E M A A A A Y D
gm046959_Glyma1    - - - - - - - - - - - - S S K R H - P L Y H G I R C R G G K W V T E I R E P R K T N R I W L G T F L T P E M A A A A Y D
 
AT1G12630.1     V A A M A L K G R E A V L N F P G S V G S Y P V P E S T S A A D I R A A A A A A A A M - - - - - - - - - K G C E E G E E
Sb002691_Sorbi1    A A A L A L R G A E A A L N F P G A A M S R P A P A S C S P D D I R A A A A A A A A A V I G R S H S P Q V G G E A A A G
pt012166_POPTR_    V A V L A L K G A D A V L N F P S S V G T Y P V P A S T S P T D I R N A A N A A A A L - - - - - - - - - K K A E M S Y N
gm046959_Glyma1    V A A L A L K G N E A V L N F P D S V G R Y P V P A S N S P S D I R F A A I A A A E L - - - - - - - - - M K P E A N N N
 
AT1G12630.1     E K K A K E K K S S S S K S R A R E C H V D N D V G S S S W C G T E F M D E E E V L N M P N L L A N M A E G M M V A P P
Sb002691_Sorbi1    G G C G A S T W S S G A G A Q G Q - - - - - - - V P E H R A G D R R I V D E D D V F Q V P R L L A G M A E G L M M S P P
pt012166_POPTR_    E A L V E Q P R N D C A V G T - - - - - - - - - F L A S G - - G E E F V D E E A L F D M P N L L V D M A G G M L L S P P
gm046959_Glyma1    N N V N A S T T N N A A V Q S D - - - - - S N D V L P S F - - E T E F M D E E A I F S M P S L L V D M A G G M L L S P P
 
AT1G12630.1     S W M G S R P S D - - - - - D S P E N S N D - E D L W G Y -
Sb002691_Sorbi1    R L V G P - A T D G A V L L E E D G S E D G V V S L W D H S
pt012166_POPTR_    R - I T P S P S D - - - - - D S Q G T S D G - E S L W S Y S
gm046959_Glyma1    R - M S P - P S D - - - - - N E - - - - - - - - - - - - - -
 
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