fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G12630.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt024198 not found in 282aa AT5G52020.1 not_not 0.468879668 III
Pt027273 not found in 250aa AT5G52020.1 not_not 0.456431535 III
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G12630.1     --------------------------------------------------------MNSS
pt027273_POPTR_ MANPK---PQADQLPPLH----------------------------------SPILIPSP
pt024198_POPTR_ MANTNSNVPQADQSPPPQPSNPSIQVPDPPSSILLPILQDDQYAPHSTSSNKSPRLIPSP
                                                                        : *.

AT1G12630.1     MASAG-------------------------LGSRRKD----------------------P
pt027273_POPTR_ IRSSGQPFSSRHDEHPPRLIRSPIGFSSQPMSGRHGDQSPRRPIRPPGGSSAQPASGRHP
pt024198_POPTR_ AGSLGQPLTVRQDEYSPRF-----GFPGQPVSGRQDDQSPRS-TRSSGGSSTQPTSGRHP
                  * *                         :..*: *                      *

AT1G12630.1     VYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSV
pt027273_POPTR_ TFKGVRLRSGKWVSEIREPRKTTRVWLGTYPTPEMAATAYDVAALALKGTNTPLNFPESI
pt024198_POPTR_ SYKGIRLRSGKWVSEIREPRKTTRVWLGTYPTPEMAAAAYDAAALALKGPDTPLNFPESI
                 ::*:* *****************:****** .****:***.**:**** :: **** *:

AT1G12630.1     GSYPVPESTSAADIRAAAAAAAAMKGC--EEG-EEEKKAKEKKS-SSSKSRARECHVDND
pt027273_POPTR_ LSYPTPASASPGDIRAAAASAASARSPKRESGPNPEMGQPETEG-SSSIITA-------D
pt024198_POPTR_ LSYPIPASASSSDIRAAAASAASSRSPRPEAGPNPERDRLETEGTSSSTTTA-------D
                 *** * *:*..*******:**: :.   * * : *    *.:. ***   *       *

AT1G12630.1     VGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENSNDEDLWGY-
pt027273_POPTR_ VQS----GQEIFDEEELLNMPNLLVDMAGGMLVSPPR-INTLSSDDSPGSSDAESLWSYH
pt024198_POPTR_ IQS----GQEFIDEEELLNLPSLLVDMAGGMLVSPPR-INTPSSDDSPGNSDAENLWSYH
                : *    * *::****:**:*.**.:** **:*:**  :.: .***** .*: *.**.*
BoxShade v3.31 C (beta, 970507) Output
AT1G12630.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M N S S
pt027273_POPTR_    M A N P K - - - P Q A D Q L P P L H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S P I L I P S P
pt024198_POPTR_    M A N T N S N V P Q A D Q S P P P Q P S N P S I Q V P D P P S S I L L P I L Q D D Q Y A P H S T S S N K S P R L I P S P
 
AT1G12630.1     M A S A G - - - - - - - - - - - - - - - - - - - - - - - - - L G S R R K D - - - - - - - - - - - - - - - - - - - - - - P
pt027273_POPTR_    I R S S G Q P F S S R H D E H P P R L I R S P I G F S S Q P M S G R H G D Q S P R R P I R P P G G S S A Q P A S G R H P
pt024198_POPTR_    A G S L G Q P L T V R Q D E Y S P R F - - - - - G F P G Q P V S G R Q D D Q S P R S - T R S S G G S S T Q P T S G R H P
 
AT1G12630.1     V Y R G I R C R S G K W V S E I R E P R K T T R I W L G T Y P M A E M A A A A Y D V A A M A L K G R E A V L N F P G S V
pt027273_POPTR_    T F K G V R L R S G K W V S E I R E P R K T T R V W L G T Y P T P E M A A T A Y D V A A L A L K G T N T P L N F P E S I
pt024198_POPTR_    S Y K G I R L R S G K W V S E I R E P R K T T R V W L G T Y P T P E M A A A A Y D A A A L A L K G P D T P L N F P E S I
 
AT1G12630.1     G S Y P V P E S T S A A D I R A A A A A A A A M K G C - - E E G - E E E K K A K E K K S - S S S K S R A R E C H V D N D
pt027273_POPTR_    L S Y P T P A S A S P G D I R A A A A S A A S A R S P K R E S G P N P E M G Q P E T E G - S S S I I T A - - - - - - - D
pt024198_POPTR_    L S Y P I P A S A S S S D I R A A A A S A A S S R S P R P E A G P N P E R D R L E T E G T S S S T T T A - - - - - - - D
 
AT1G12630.1     V G S S S W C G T E F M D E E E V L N M P N L L A N M A E G M M V A P P S W M G S R P S D D S P E N S N D E D L W G Y -
pt027273_POPTR_    V Q S - - - - G Q E I F D E E E L L N M P N L L V D M A G G M L V S P P R - I N T L S S D D S P G S S D A E S L W S Y H
pt024198_POPTR_    I Q S - - - - G Q E F I D E E E L L N L P S L L V D M A G G M L V S P P R - I N T P S S D D S P G N S D A E N L W S Y H
 
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