fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G12630.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052604 not found in 188aa AT2G36450.1 not_not 0.410788381 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G12630.1     ------MNSSMASAGLGSRRKDPVYRGIRCR-SGKWVSEIREPRKTTRIWLGTYPMAEMA
gm052604_Glyma1 MRSSNGTSSSRASNGNTGRH--PVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMA
                       .** ** *  .*:  *****:* * ***********:*..******:. .***

AT1G12630.1     AAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAA--------AMKGCE
gm052604_Glyma1 AIAYDVAALALKGKDAELNFPNSASSLPIPASSAAHDIQMAAALAATAVGAANDALEGSQ
                * ******:****::* ****.*..* *:* *::* **: *** **        *::*.:

AT1G12630.1     EGEEEKKAKEKKSSSSKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMM
gm052604_Glyma1 GGNVSVSLAEEFSGGNLN-------------------HFVDEDLIFDMPNILVNMAEGML
                 *: . .  *: *... .                   .*:**: :::***:*.******:

AT1G12630.1     VAPPSWMGSRPSDDSPENSNDEDLWGY---
gm052604_Glyma1 LSPPRF-DNFAATDYEYMDEDPNLWGFPNY
                ::** : .. .: *    .:* :***:
BoxShade v3.31 C (beta, 970507) Output
AT1G12630.1     - - - - - - M N S S M A S A G L G S R R K D P V Y R G I R C R - S G K W V S E I R E P R K T T R I W L G T Y P M A E M A
gm052604_Glyma1    M R S S N G T S S S R A S N G N T G R H - - P V Y R G V R R R S S G K W V S E I R E P K K P N R I W L G T F A T P E M A
 
AT1G12630.1     A A A Y D V A A M A L K G R E A V L N F P G S V G S Y P V P E S T S A A D I R A A A A A A A - - - - - - - - A M K G C E
gm052604_Glyma1    A I A Y D V A A L A L K G K D A E L N F P N S A S S L P I P A S S A A H D I Q M A A A L A A T A V G A A N D A L E G S Q
 
AT1G12630.1     E G E E E K K A K E K K S S S S K S R A R E C H V D N D V G S S S W C G T E F M D E E E V L N M P N L L A N M A E G M M
gm052604_Glyma1    G G N V S V S L A E E F S G G N L N - - - - - - - - - - - - - - - - - - - H F V D E D L I F D M P N I L V N M A E G M L
 
AT1G12630.1     V A P P S W M G S R P S D D S P E N S N D E D L W G Y - - -
gm052604_Glyma1    L S P P R F - D N F A A T D Y E Y M D E D P N L W G F P N Y
 
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