fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G12630.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm046959 not found in 165aa AT1G12630.1 1st_1st 0.477178423 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G12630.1     MNSSMASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVA
gm046959_Glyma1 ----MASS--SSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVA
                    ***:  .* ::.*:*:*****.****:********.******:  .**********

AT1G12630.1     AMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSS
gm046959_Glyma1 ALALKGNEAVLNFPDSVGRYPVPASNSPSDIRFAAIAAAELM-----KPEANNNNNVNAS
                *:****.*******.*** **** *.*.:*** ** *** :      : * : ::: .:*

AT1G12630.1     SKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDS
gm046959_Glyma1 TTNNAAVQSDSNDVLPSF--ETEFMDEEAIFSMPSLLVDMAGGMLLSPPRM--SPPSDNE
                :...*     .*** .*    ******* ::.**.**.:** **:::**    * ***:.

AT1G12630.1     PENSNDEDLWGY
gm046959_Glyma1 ------------
BoxShade v3.31 C (beta, 970507) Output
AT1G12630.1     M N S S M A S A G L G S R R K D P V Y R G I R C R S G K W V S E I R E P R K T T R I W L G T Y P M A E M A A A A Y D V A
gm046959_Glyma1    - - - - M A S S - - S S S K R H P L Y H G I R C R G G K W V T E I R E P R K T N R I W L G T F L T P E M A A A A Y D V A
 
AT1G12630.1     A M A L K G R E A V L N F P G S V G S Y P V P E S T S A A D I R A A A A A A A A M K G C E E G E E E K K A K E K K S S S
gm046959_Glyma1    A L A L K G N E A V L N F P D S V G R Y P V P A S N S P S D I R F A A I A A A E L M - - - - - K P E A N N N N N V N A S
 
AT1G12630.1     S K S R A R E C H V D N D V G S S S W C G T E F M D E E E V L N M P N L L A N M A E G M M V A P P S W M G S R P S D D S
gm046959_Glyma1    T T N N A A V Q S D S N D V L P S F - - E T E F M D E E A I F S M P S L L V D M A G G M L L S P P R M - - S P P S D N E
 
AT1G12630.1     P E N S N D E D L W G Y
gm046959_Glyma1    - - - - - - - - - - - -
 
0