fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G13290.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055125 GSKAGSLMLRLPCYCC in 142/264 AT1G13290.1 1st_1st 0.573355817 Ia
Pt033478 not found in 275aa AT1G13290.1 1st_1st 0.620573355 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G13290.1     MYNNNQYSF-------------SGDEDSVVLSLGPPGQQ-------YPSHNKPTST----
pt033478_POPTR_ -MQTPSFAYISSIESAYIEADDQGDEESLFLSLSPPGQQHI---TRHPNHRR-SSI----
gm055125_Glyma2 MQKTYSFSCISSCG--------INNEDSISLSLGPPSQHKFKSRASNPKH---SSTMRDH
                  :. .::               .:*:*: ***.**.*:        *.*   :*     

AT1G13290.1     --KPSSDHEFNHPLTNPNGVTVALHIGPPSSDKETLSGGNNQEGLTARQGQYWIPSLSQI
pt033478_POPTR_ --HPRNIQE--NPSNFESGVTIALHIGPPTAGARTSNHPDNHIG-SLVEGQYWIPSPAQI
gm055125_Glyma2 QQKPSSDDL--------SGVTVALHIGLPTPTAATKPSS------PPIHGRYWIPTPQQI
                  :* . .         .***:***** *:.   *          .  .*:****:  **

AT1G13290.1     LVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEG
pt033478_POPTR_ LVGPTQFTCSVCNKTFNRYNNMQMHMWGHGSQYRKGPDSLKGPKQASSTLRLPCYCCAEG
gm055125_Glyma2 LIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGSNSLRGSKAGSLMLRLPCYCCEEG
                *:*****:*:********:*****************.:**:*.* .*  ******** **

AT1G13290.1     CKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKLWF
pt033478_POPTR_ CKNNIEHPRSRPLKDFKTLQTHYKRKHGAKPFGCR-KCGKPFAVRGDWRTHEKNCGKLWF
gm055125_Glyma2 CKNNINYPRSKPLKDFRTLKTHYKRKHGEKPFECR-KCHKPFAVRGDWRTHEKNCGKLWF
                *****::***:*****:**:******** *** ** ** *.*******************

AT1G13290.1     CVCGSDFKHKRSLKDHVRAFGDGHAAHTVSDRVVGIGDADEDDEEEEEEEEDDVEEEDAH
pt033478_POPTR_ CICGSDFKHKRSLKDHVRAFGDGHAAHTV--------DMCHDIDEEEDQEDDINNMED--
gm055125_Glyma2 CVCGSDFKHKRSLKDHVRAFGNGHASHNLSEER---GDEGGDDDSE--------------
                *:*******************:***:*.:        *   * :.*              

AT1G13290.1     EENVRGEKNYGIRYDHFRRYGQISDDNY
pt033478_POPTR_ ----------------------------
gm055125_Glyma2 -----------VAVFTFK----------
BoxShade v3.31 C (beta, 970507) Output
AT1G13290.1     M Y N N N Q Y S F - - - - - - - - - - - - - S G D E D S V V L S L G P P G Q Q - - - - - - - Y P S H N K P T S T - - - -
pt033478_POPTR_    - M Q T P S F A Y I S S I E S A Y I E A D D Q G D E E S L F L S L S P P G Q Q H I - - - T R H P N H R R - S S I - - - -
gm055125_Glyma2    M Q K T Y S F S C I S S C G - - - - - - - - I N N E D S I S L S L G P P S Q H K F K S R A S N P K H - - - S S T M R D H
 
AT1G13290.1     - - K P S S D H E F N H P L T N P N G V T V A L H I G P P S S D K E T L S G G N N Q E G L T A R Q G Q Y W I P S L S Q I
pt033478_POPTR_    - - H P R N I Q E - - N P S N F E S G V T I A L H I G P P T A G A R T S N H P D N H I G - S L V E G Q Y W I P S P A Q I
gm055125_Glyma2    Q Q K P S S D D L - - - - - - - - S G V T V A L H I G L P T P T A A T K P S S - - - - - - P P I H G R Y W I P T P Q Q I
 
AT1G13290.1     L V G P T Q F S C S V C N K T F N R F N N M Q M H M W G H G S Q Y R K G P E S L R G T K S S S S I L R L P C Y C C A E G
pt033478_POPTR_    L V G P T Q F T C S V C N K T F N R Y N N M Q M H M W G H G S Q Y R K G P D S L K G P K Q A S S T L R L P C Y C C A E G
gm055125_Glyma2    L I G P T Q F S C T V C N K T F N R F N N M Q M H M W G H G S Q Y R K G S N S L R G S K A G S L M L R L P C Y C C E E G
 
AT1G13290.1     C K N N I D H P R S K P L K D F R T L Q T H Y K R K H G A K P F R C R K K C E K T F A V R G D W R T H E K N C G K L W F
pt033478_POPTR_    C K N N I E H P R S R P L K D F K T L Q T H Y K R K H G A K P F G C R - K C G K P F A V R G D W R T H E K N C G K L W F
gm055125_Glyma2    C K N N I N Y P R S K P L K D F R T L K T H Y K R K H G E K P F E C R - K C H K P F A V R G D W R T H E K N C G K L W F
 
AT1G13290.1     C V C G S D F K H K R S L K D H V R A F G D G H A A H T V S D R V V G I G D A D E D D E E E E E E E E D D V E E E D A H
pt033478_POPTR_    C I C G S D F K H K R S L K D H V R A F G D G H A A H T V - - - - - - - - D M C H D I D E E E D Q E D D I N N M E D - -
gm055125_Glyma2    C V C G S D F K H K R S L K D H V R A F G N G H A S H N L S E E R - - - G D E G G D D D S E - - - - - - - - - - - - - -
 
AT1G13290.1     E E N V R G E K N Y G I R Y D H F R R Y G Q I S D D N Y
pt033478_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm055125_Glyma2    - - - - - - - - - - - V A V F T F K - - - - - - - - - -
 
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