fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G13290.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055125 GSKAGSLMLRLPCYCC in 142/264 AT1G13290.1 1st_1st 0.573355817 Ia
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G13290.1     MYNNNQYSFS-------GDEDSVVLSLGPPGQQ----YPSHNKPTST------KPSSDHE
gm055125_Glyma2 --MQKTYSFSCISSCGINNEDSISLSLGPPSQHKFKSRASNPKHSSTMRDHQQKPSSD--
                   :: ****       .:***: ******.*:     .*: * :**      *****  

AT1G13290.1     FNHPLTNPNGVTVALHIGPPSSDKETLSGGNNQEGLTARQGQYWIPSLSQILVGPTQFSC
gm055125_Glyma2 ------DLSGVTVALHIGLPTPTAAT------KPSSPPIHGRYWIPTPQQILIGPTQFSC
                      : .********* *:.   *      : . .. :*:****: .***:*******

AT1G13290.1     SVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEGCKNNIDHPR
gm055125_Glyma2 TVCNKTFNRFNNMQMHMWGHGSQYRKGSNSLRGSKAGSLMLRLPCYCCEEGCKNNINYPR
                :**************************.:****:*:.* :******** *******::**

AT1G13290.1     SKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKLWFCVCGSDFKH
gm055125_Glyma2 SKPLKDFRTLKTHYKRKHGEKPFECR-KCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKH
                **********:******** ***.** **.*.****************************

AT1G13290.1     KRSLKDHVRAFGDGHAAHTVSDRVVGIGDADEDDEEEEEEEEDDVEEEDAHEENVRGEKN
gm055125_Glyma2 KRSLKDHVRAFGNGHASHNLSEER---GDEGGDDDSE-----------------------
                ************:***:*.:*:.    ** . **:.*                       

AT1G13290.1     YGIRYDHFRRYGQISDDNY
gm055125_Glyma2 --VAVFTFK----------
                  :    *:
BoxShade v3.31 C (beta, 970507) Output
AT1G13290.1     M Y N N N Q Y S F S - - - - - - - G D E D S V V L S L G P P G Q Q - - - - Y P S H N K P T S T - - - - - - K P S S D H E
gm055125_Glyma2    - - M Q K T Y S F S C I S S C G I N N E D S I S L S L G P P S Q H K F K S R A S N P K H S S T M R D H Q Q K P S S D - -
 
AT1G13290.1     F N H P L T N P N G V T V A L H I G P P S S D K E T L S G G N N Q E G L T A R Q G Q Y W I P S L S Q I L V G P T Q F S C
gm055125_Glyma2    - - - - - - D L S G V T V A L H I G L P T P T A A T - - - - - - K P S S P P I H G R Y W I P T P Q Q I L I G P T Q F S C
 
AT1G13290.1     S V C N K T F N R F N N M Q M H M W G H G S Q Y R K G P E S L R G T K S S S S I L R L P C Y C C A E G C K N N I D H P R
gm055125_Glyma2    T V C N K T F N R F N N M Q M H M W G H G S Q Y R K G S N S L R G S K A G S L M L R L P C Y C C E E G C K N N I N Y P R
 
AT1G13290.1     S K P L K D F R T L Q T H Y K R K H G A K P F R C R K K C E K T F A V R G D W R T H E K N C G K L W F C V C G S D F K H
gm055125_Glyma2    S K P L K D F R T L K T H Y K R K H G E K P F E C R - K C H K P F A V R G D W R T H E K N C G K L W F C V C G S D F K H
 
AT1G13290.1     K R S L K D H V R A F G D G H A A H T V S D R V V G I G D A D E D D E E E E E E E E D D V E E E D A H E E N V R G E K N
gm055125_Glyma2    K R S L K D H V R A F G N G H A S H N L S E E R - - - G D E G G D D D S E - - - - - - - - - - - - - - - - - - - - - - -
 
AT1G13290.1     Y G I R Y D H F R R Y G Q I S D D N Y
gm055125_Glyma2    - - V A V F T F K - - - - - - - - - -
 
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