fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G13600.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm000832 not found in 198aa AT3G30530.1 not_not 0.407624633 III
Gm051143 not found in 220aa AT3G30530.1 not_not 0.407624633 III
Gm022507 not found in 193aa AT3G30530.1 not_not 0.401759530 III
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Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G13600.1     MNTIPAE-LTGYFHYLPPDKY------NNQTPIMESEYFNMPSSPTSCSSFYHLNGLINN
gm000832_Glyma0 --MVPSE-IRGVHYLAPENPFLVPP---NF-SLLQSDI------PN-----LHLNTLLSN
gm051143_Glyma1 --MQSREVVSGLNYLLPSNPCPYPPNNNNYTTMFQNNI-----NPT-----FQFQRFSNQ
gm022507_Glyma0 --MQARE-ITGLNYLLPPDPC------FNY-SMVQNTI------PT-----FQLHKLSNQ
                    . * : *  :  * :         *  .:.:.        *.      ::: : .:

AT1G13600.1     ------NNYSSSSNGQDLMT------SNNSTSDE-DHQQSMVIDERKQRRMISNRESARR
gm000832_Glyma0 FPN---CHFPPSG--HEFVVPPSSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARR
gm051143_Glyma1 IYGYNNINNTPYHKVPDLFSPQSSCISSNSTSDEADEQNLSLINERKHRRMISNRESARR
gm022507_Glyma0 FYG---LQKPPPQVLADFSPPQSSCISSNSTSDEADEQQQSLINERKHRRMISNRESARR
                       : ..     ::        *.****** *. :  :*:***:************

AT1G13600.1     SRMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALKENAKLKEETSDLRQLISE
gm000832_Glyma0 SRMRKQKHLDELWSQVVRLRTENHNLIDKLNHVSESHDRVLQENARLKEEASALRQMLAD
gm051143_Glyma1 SRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDQVMQENAQLKEQALELRQMIRD
gm022507_Glyma0 SRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDKVAQENVQLREEASELRQMICD
                ******:*********: **.:** *:****:*****: . :**.:*:*::  ***:: :

AT1G13600.1     IKSHNEDDNSFLRELED---------SISNSRSDS----NQSGRDF--ELC--
gm000832_Glyma0 MQIGT----AFACTMED-LEDL--PCNTSQLKPDP---LNQSITPA--DMIHE
gm051143_Glyma1 MQIHSPCPSSFITPLEDHHHDVDHVIPSAYLRSDSSNQLSNSCNNNMDDLLG-
gm022507_Glyma0 MQLHSPYHPPPLSPIDD---DV-----SPYVKSDSS--ITDSL-----DLLG-
                ::  .    .    ::*           .  :.*.    .:*      ::
BoxShade v3.31 C (beta, 970507) Output
AT1G13600.1     M N T I P A E - L T G Y F H Y L P P D K Y - - - - - - N N Q T P I M E S E Y F N M P S S P T S C S S F Y H L N G L I N N
gm000832_Glyma0    - - M V P S E - I R G V H Y L A P E N P F L V P P - - - N F - S L L Q S D I - - - - - - P N - - - - - L H L N T L L S N
gm051143_Glyma1    - - M Q S R E V V S G L N Y L L P S N P C P Y P P N N N N Y T T M F Q N N I - - - - - N P T - - - - - F Q F Q R F S N Q
gm022507_Glyma0    - - M Q A R E - I T G L N Y L L P P D P C - - - - - - F N Y - S M V Q N T I - - - - - - P T - - - - - F Q L H K L S N Q
 
AT1G13600.1     - - - - - - N N Y S S S S N G Q D L M T - - - - - - S N N S T S D E - D H Q Q S M V I D E R K Q R R M I S N R E S A R R
gm000832_Glyma0    F P N - - - C H F P P S G - - H E F V V P P S S C L S S N S T S D E A D E I Q F N I I D E R K H R R M I S N R E S A R R
gm051143_Glyma1    I Y G Y N N I N N T P Y H K V P D L F S P Q S S C I S S N S T S D E A D E Q N L S L I N E R K H R R M I S N R E S A R R
gm022507_Glyma0    F Y G - - - L Q K P P P Q V L A D F S P P Q S S C I S S N S T S D E A D E Q Q Q S L I N E R K H R R M I S N R E S A R R
 
AT1G13600.1     S R M R K Q R H L D E L W S Q V I R L R T D N H C L M D K L N R V S E S H E L A L K E N A K L K E E T S D L R Q L I S E
gm000832_Glyma0    S R M R K Q K H L D E L W S Q V V R L R T E N H N L I D K L N H V S E S H D R V L Q E N A R L K E E A S A L R Q M L A D
gm051143_Glyma1    S R M R K Q K H L D E L W S Q V V W L R N E N H Q L M D K L N H V S E S H D Q V M Q E N A Q L K E Q A L E L R Q M I R D
gm022507_Glyma0    S R M R K Q K H L D E L W S Q V V W L R N E N H Q L M D K L N H V S E S H D K V A Q E N V Q L R E E A S E L R Q M I C D
 
AT1G13600.1     I K S H N E D D N S F L R E L E D - - - - - - - - - S I S N S R S D S - - - - N Q S G R D F - - E L C - -
gm000832_Glyma0    M Q I G T - - - - A F A C T M E D - L E D L - - P C N T S Q L K P D P - - - L N Q S I T P A - - D M I H E
gm051143_Glyma1    M Q I H S P C P S S F I T P L E D H H H D V D H V I P S A Y L R S D S S N Q L S N S C N N N M D D L L G -
gm022507_Glyma0    M Q L H S P Y H P P P L S P I D D - - - D V - - - - - S P Y V K S D S S - - I T D S L - - - - - D L L G -
 
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