fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G15050.1 FGGVIDLGLSLRTIQH at 61/185 in AT1G15050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054444 DDGIIDLGLSLGTVRH in 30/190 AT2G01200.2 1st_not 0.404580152 II
HGGYSSLALQLEDMFG in 118/190
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G15050.1     MYCSDPPHPLHLVASDKQQKDHKLILSWKKPTMDSDPLGVFPNSPKYHPYYSQTTEFGGV
gm054444_Glyma2 --------------------------------MESNTSRFLLNSSTLHSVFYQEKQDDGI
                                                *:*:.  .: **.. *. : * .: .*:

AT1G15050.1     IDLGLSLRTIQHEIYHSSGQRY------------------------------------CS
gm054444_Glyma2 IDLGLSLGTVRHEAYHSSANLYDEELMDWPHSNLNLKNSRTMHSRSVHQNFDEEIEGVQS
                ******* *::** ****.: *                                     *

AT1G15050.1     NEGYRRKWGYVKVTMDGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEF
gm054444_Glyma2 NE----RWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSQSVSGLRLFQSGSEY
                **    :*.****.***:.:***:******.**:** ******* **********  **:

AT1G15050.1     CLVYRDEEGLWRNAGDVPWNEFIESVERLRITRRNDAVLPF-----
gm054444_Glyma2 SLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNSGIVSYSSRCT
                .*.*:*.:. ** .*****:****.*:****:*:*..::.:
BoxShade v3.31 C (beta, 970507) Output
AT1G15050.1     M Y C S D P P H P L H L V A S D K Q Q K D H K L I L S W K K P T M D S D P L G V F P N S P K Y H P Y Y S Q T T E F G G V
gm054444_Glyma2    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E S N T S R F L L N S S T L H S V F Y Q E K Q D D G I
 
AT1G15050.1     I D L G L S L R T I Q H E I Y H S S G Q R Y - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - C S
gm054444_Glyma2    I D L G L S L G T V R H E A Y H S S A N L Y D E E L M D W P H S N L N L K N S R T M H S R S V H Q N F D E E I E G V Q S
 
AT1G15050.1     N E G Y R R K W G Y V K V T M D G L V V G R K V C V L D H G S Y S T L A H Q L E D M F G M Q S V S G L R L F Q M E S E F
gm054444_Glyma2    N E - - - - R W A Y V K V N M D G V T I G R K I C V L D H G G Y S S L A L Q L E D M F G S Q S V S G L R L F Q S G S E Y
 
AT1G15050.1     C L V Y R D E E G L W R N A G D V P W N E F I E S V E R L R I T R R N D A V L P F - - - - -
gm054444_Glyma2    S L F Y K D R Q D N W R P V G D V P W K E F I E C V K R L R I A R K N S G I V S Y S S R C T
 
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