fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G15050.1 FGGVIDLGLSLRTIQH at 61/185 in AT1G15050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054444 DDGIIDLGLSLGTVRH in 30/190 AT2G01200.2 1st_not 0.404580152 II
HGGYSSLALQLEDMFG in 118/190
Gm029002 DDGIIDLGLSLGTVQH in 30/191 AT2G01200.2 not_not 0.404580152 III
HGGYSSLALQLEDMFG in 119/191
Pt034740 DDGIIDLGLSLRTLKP in 30/160 AT1G15050.1 1st_1st 0.483460559 Ia
HGGYSSLALQLEDMFG in 88/160
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G15050.1     MYCSDPPHPLHLVASDKQQKDHKLILSWKKPTMDSDPLGVFPNSPKYHPYYSQTTEFGGV
gm054444_Glyma2 --------------------------------MESNTSRFLLNSSTLHSVFYQEKQDDGI
pt034740_POPTR_ --------------------------------MDSNASGFLLNPPALHSTYYQPREDDGI
gm029002_Glyma1 --------------------------------MESNTSSFLLNSSTLHSVFYQDKQDDGI
                                                *:*:.  .: *..  *. : *  : .*:

AT1G15050.1     IDLGLSLRTIQHEIYHSSGQRYCS-------------------------------NEGYR
gm054444_Glyma2 IDLGLSLGTVRHEAYHSSANLYDEELMDWPHSNLNLKNSRTMHSRSV-HQNFDEEIEGVQ
pt034740_POPTR_ IDLGLSLRTLKPEAYHPSG-----------------------HRMPL--------AEGVQ
gm029002_Glyma1 IDLGLSLGTVQHEAYHSSANLYDEDLMDWPHSNLNLKNSSTMHSRSAHHQNFDEEIEGVQ
                ******* *:: * **.*.                                     ** :

AT1G15050.1     R--KWGYVKVTMDGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLV
gm054444_Glyma2 SNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSQSVSGLRLFQSGSEYSLF
pt034740_POPTR_ SKDRWAYVKVNMDGVIVGRKICMLDHGGYSSLALQLEDMFGRQSASGLRLFQAGSEFCLF
gm029002_Glyma1 SNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLF
                   :*.****.***: :***:*:****.**:** ******* :*.*******  **:.*.

AT1G15050.1     YRDEEGLWRNAGDVPWNEFIESVERLRITRRNDAVLPF-----
gm054444_Glyma2 YKDRQDNWRPVGDVPWKEFIECVKRLRIARKNSGIVSYSSRCT
pt034740_POPTR_ YKDREENWRTVGDVPWKEFVESVKRLRIARKSEPLLPYSPAFS
gm029002_Glyma1 YKDRQDNWRPVGDVPWKEFIECVKRLRIARKNSGIVSCSSRYT
                *:*.:  ** .*****:**:*.*:****:*:.. ::.
BoxShade v3.31 C (beta, 970507) Output
AT1G15050.1     M Y C S D P P H P L H L V A S D K Q Q K D H K L I L S W K K P T M D S D P L G V F P N S P K Y H P Y Y S Q T T E F G G V
gm054444_Glyma2    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E S N T S R F L L N S S T L H S V F Y Q E K Q D D G I
pt034740_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M D S N A S G F L L N P P A L H S T Y Y Q P R E D D G I
gm029002_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E S N T S S F L L N S S T L H S V F Y Q D K Q D D G I
 
AT1G15050.1     I D L G L S L R T I Q H E I Y H S S G Q R Y C S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - N E G Y R
gm054444_Glyma2    I D L G L S L G T V R H E A Y H S S A N L Y D E E L M D W P H S N L N L K N S R T M H S R S V - H Q N F D E E I E G V Q
pt034740_POPTR_    I D L G L S L R T L K P E A Y H P S G - - - - - - - - - - - - - - - - - - - - - - - H R M P L - - - - - - - - A E G V Q
gm029002_Glyma1    I D L G L S L G T V Q H E A Y H S S A N L Y D E D L M D W P H S N L N L K N S S T M H S R S A H H Q N F D E E I E G V Q
 
AT1G15050.1     R - - K W G Y V K V T M D G L V V G R K V C V L D H G S Y S T L A H Q L E D M F G M Q S V S G L R L F Q M E S E F C L V
gm054444_Glyma2    S N E R W A Y V K V N M D G V T I G R K I C V L D H G G Y S S L A L Q L E D M F G S Q S V S G L R L F Q S G S E Y S L F
pt034740_POPTR_    S K D R W A Y V K V N M D G V I V G R K I C M L D H G G Y S S L A L Q L E D M F G R Q S A S G L R L F Q A G S E F C L F
gm029002_Glyma1    S N E R W A Y V K V N M D G V T I G R K I C V L D H G G Y S S L A L Q L E D M F G S H S V S G L R L F Q S G S E Y S L F
 
AT1G15050.1     Y R D E E G L W R N A G D V P W N E F I E S V E R L R I T R R N D A V L P F - - - - -
gm054444_Glyma2    Y K D R Q D N W R P V G D V P W K E F I E C V K R L R I A R K N S G I V S Y S S R C T
pt034740_POPTR_    Y K D R E E N W R T V G D V P W K E F V E S V K R L R I A R K S E P L L P Y S P A F S
gm029002_Glyma1    Y K D R Q D N W R P V G D V P W K E F I E C V K R L R I A R K N S G I V S C S S R Y T
 
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