fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G15050.1 FGGVIDLGLSLRTIQH at 61/185 in AT1G15050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt034740 DDGIIDLGLSLRTLKP in 30/160 AT1G15050.1 1st_1st 0.483460559 Ia
HGGYSSLALQLEDMFG in 88/160
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G15050.1     MYCSDPPHPLHLVASDKQQKDHKLILSWKKPTMDSDPLGVFPNSPKYHPYYSQTTEFGGV
pt034740_POPTR_ --------------------------------MDSNASGFLLNPPALHSTYYQPREDDGI
                                                ***:. *.: *.*  *. * *. * .*:

AT1G15050.1     IDLGLSLRTIQHEIYHSSGQRYCSNEGYRRK--WGYVKVTMDGLVVGRKVCVLDHGSYST
pt034740_POPTR_ IDLGLSLRTLKPEAYHPSGHRMPLAEGVQSKDRWAYVKVNMDGVIVGRKICMLDHGGYSS
                *********:: * **.**:*    ** : *  *.****.***::****:*:****.**:

AT1G15050.1     LAHQLEDMFGMQSVSGLRLFQMESEFCLVYRDEEGLWRNAGDVPWNEFIESVERLRITRR
pt034740_POPTR_ LALQLEDMFGRQSASGLRLFQAGSEFCLFYKDREENWRTVGDVPWKEFVESVKRLRIARK
                ** ******* **.*******  *****.*:*.*  **..*****:**:***:****:*:

AT1G15050.1     NDAVLPF-----
pt034740_POPTR_ SEPLLPYSPAFS
                .:.:**:
BoxShade v3.31 C (beta, 970507) Output
AT1G15050.1     M Y C S D P P H P L H L V A S D K Q Q K D H K L I L S W K K P T M D S D P L G V F P N S P K Y H P Y Y S Q T T E F G G V
pt034740_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M D S N A S G F L L N P P A L H S T Y Y Q P R E D D G I
 
AT1G15050.1     I D L G L S L R T I Q H E I Y H S S G Q R Y C S N E G Y R R K - - W G Y V K V T M D G L V V G R K V C V L D H G S Y S T
pt034740_POPTR_    I D L G L S L R T L K P E A Y H P S G H R M P L A E G V Q S K D R W A Y V K V N M D G V I V G R K I C M L D H G G Y S S
 
AT1G15050.1     L A H Q L E D M F G M Q S V S G L R L F Q M E S E F C L V Y R D E E G L W R N A G D V P W N E F I E S V E R L R I T R R
pt034740_POPTR_    L A L Q L E D M F G R Q S A S G L R L F Q A G S E F C L F Y K D R E E N W R T V G D V P W K E F V E S V K R L R I A R K
 
AT1G15050.1     N D A V L P F - - - - -
pt034740_POPTR_    S E P L L P Y S P A F S
 
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