fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G15050.1 FGGVIDLGLSLRTIQH at 61/185 in AT1G15050.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029002 DDGIIDLGLSLGTVQH in 30/191 AT2G01200.2 not_not 0.404580152 III
HGGYSSLALQLEDMFG in 119/191
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G15050.1     MYCSDPPHPLHLVASDKQQKDHKLILSWKKPTMDSDPLGVFPNSPKYHPYYSQTTEFGGV
gm029002_Glyma1 --------------------------------MESNTSSFLLNSSTLHSVFYQDKQDDGI
                                                *:*:. ..: **.. *. : * .: .*:

AT1G15050.1     IDLGLSLRTIQHEIYHSSGQRYCSN-------------------------------EGYR
gm029002_Glyma1 IDLGLSLGTVQHEAYHSSANLYDEDLMDWPHSNLNLKNSSTMHSRSAHHQNFDEEIEGVQ
                ******* *:*** ****.: * .:                               ** :

AT1G15050.1     --RKWGYVKVTMDGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLV
gm029002_Glyma1 SNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLF
                  .:*.****.***:.:***:******.**:** ******* :*********  **:.*.

AT1G15050.1     YRDEEGLWRNAGDVPWNEFIESVERLRITRRNDAVLPF-----
gm029002_Glyma1 YKDRQDNWRPVGDVPWKEFIECVKRLRIARKNSGIVSCSSRYT
                *:*.:. ** .*****:****.*:****:*:*..::.
BoxShade v3.31 C (beta, 970507) Output
AT1G15050.1     M Y C S D P P H P L H L V A S D K Q Q K D H K L I L S W K K P T M D S D P L G V F P N S P K Y H P Y Y S Q T T E F G G V
gm029002_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E S N T S S F L L N S S T L H S V F Y Q D K Q D D G I
 
AT1G15050.1     I D L G L S L R T I Q H E I Y H S S G Q R Y C S N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E G Y R
gm029002_Glyma1    I D L G L S L G T V Q H E A Y H S S A N L Y D E D L M D W P H S N L N L K N S S T M H S R S A H H Q N F D E E I E G V Q
 
AT1G15050.1     - - R K W G Y V K V T M D G L V V G R K V C V L D H G S Y S T L A H Q L E D M F G M Q S V S G L R L F Q M E S E F C L V
gm029002_Glyma1    S N E R W A Y V K V N M D G V T I G R K I C V L D H G G Y S S L A L Q L E D M F G S H S V S G L R L F Q S G S E Y S L F
 
AT1G15050.1     Y R D E E G L W R N A G D V P W N E F I E S V E R L R I T R R N D A V L P F - - - - -
gm029002_Glyma1    Y K D R Q D N W R P V G D V P W K E F I E C V K R L R I A R K N S G I V S C S S R Y T
 
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