fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G15360.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt008236 not found in 178aa AT5G11190.1 not_not 0.567484662 III
Pt005519 not found in 208aa AT5G11190.1 not_not 0.558282208 III

Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G15360.1     ----------------MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAAR
pt008236_POPTR_ ----------------MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAAR
pt005519_POPTR_ MILICSSVFLSFLSQIMVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAAR
                                ***:*********:*****:**********:********* ***

AT1G15360.1     AYDEAAVLMSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRK
pt008236_POPTR_ AYDQAAILMNGQNAKTNFPTSHLDQ-DTNLGKDN-------NSPLPAKALAELLNSKLRK
pt005519_POPTR_ AYDQAAILMNGQNAKTNFPASHLDQ-DTKLGKDN-------NSPLPAKALAELLYSKLRK
                ***:**:**.*:******* .: :  :*. ** :       .*. .:.:*:.:* :****

AT1G15360.1     CC-KSPSPSLTCLRLDTASSHIGVWQKRAGSKSDSSWVMTVELGPASSS---------QE
pt008236_POPTR_ CCGKDPSPSLTCLRLDNDNSHIGVWQKKAGSRSSSNWVMKVELGNYNKK-----------
pt005519_POPTR_ CCGKDPSPSLTCLRLDNDNSHIGVWQKKAGSCSSSNWVMRVELGNSNRKSTQVMEELRPS
                ** *.***********. .********:*** *.*.*** ****  . .           

AT1G15360.1     TTSKASQDAILAPTTEVEIGGSREEVLDEEEKVALQMIEELLNTN
pt008236_POPTR_ --TESSPTVEIEP----E-NGT-----EEEDRIAMQMIEELLNRN
pt005519_POPTR_ LSSESSSRVEIEP----EINGT-----DEEDKIAMQMIDELLNCN
                  :::*  . : *    * .*:     :**:::*:***:**** *


BoxShade v3.31 C (beta, 970507) Output
AT1G15360.1     - - - - - - - - - - - - - - - - M V Q T K K F R G V R Q R H W G S W V A E I R H P L L K R R I W L G T F E T A E E A A R
pt008236_POPTR_    - - - - - - - - - - - - - - - - M V Q S K K F R G V R Q R Q W G S W V S E I R H P L L K R R V W L G T F E T A E A A A R
pt005519_POPTR_    M I L I C S S V F L S F L S Q I M V Q S K K F R G V R Q R Q W G S W V S E I R H P L L K R R V W L G T F E T A E A A A R
 
AT1G15360.1     A Y D E A A V L M S G R N A K T N F P L N N N N T G E T S E G K T D I S A S S T M S S S T S S S S L S S I L S A K L R K
pt008236_POPTR_    A Y D Q A A I L M N G Q N A K T N F P T S H L D Q - D T N L G K D N - - - - - - - N S P L P A K A L A E L L N S K L R K
pt005519_POPTR_    A Y D Q A A I L M N G Q N A K T N F P A S H L D Q - D T K L G K D N - - - - - - - N S P L P A K A L A E L L Y S K L R K
 
AT1G15360.1     C C - K S P S P S L T C L R L D T A S S H I G V W Q K R A G S K S D S S W V M T V E L G P A S S S - - - - - - - - - Q E
pt008236_POPTR_    C C G K D P S P S L T C L R L D N D N S H I G V W Q K K A G S R S S S N W V M K V E L G N Y N K K - - - - - - - - - - -
pt005519_POPTR_    C C G K D P S P S L T C L R L D N D N S H I G V W Q K K A G S C S S S N W V M R V E L G N S N R K S T Q V M E E L R P S
 
AT1G15360.1     T T S K A S Q D A I L A P T T E V E I G G S R E E V L D E E E K V A L Q M I E E L L N T N
pt008236_POPTR_    - - T E S S P T V E I E P - - - - E - N G T - - - - - E E E D R I A M Q M I E E L L N R N
pt005519_POPTR_    L S S E S S S R V E I E P - - - - E I N G T - - - - - D E E D K I A M Q M I D E L L N C N
 
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