fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G15580.1 GLEITELRLGLPGDIV at 13/163 in AT1G15580.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm017314 GLEITELRLGLPDAEH in 12/187 AT3G15540.1 1st_not 0.523809523 II
HKGYSDLALALDKLFG in 104/187
Pt028706 not found in 189aa AT3G15540.1 1st_not 0.491071428 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G15580.1     MANESNNLGLEITELRLGLPGDIVVSGESISGKKRASPEVEIDLKCEPAKK------SQV
pt028706_POPTR_ MAQP---LGLEITELRLGPPGSENGP---KNEKKRVFSELSGEANSTTDGRKTQTT-SQV
gm017314_Glyma0 MAKEG--LGLEITELRLGLPDAEHVTVVNKNEKKRAFSQIDDENSSSGGDRKIKTNKSQV
                **:    *********** *.    .    . ***. .::. : ..    :      ***

AT1G15580.1     VGWPPVCSYRRKNSLERT-----KSSYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILF
pt028706_POPTR_ VGWPPVCSYRKKNSFNEKDSHETSKIYVKVSMDGAPFLRKVDLGMHKEYSDLVVALEKLF
gm017314_Glyma0 VGWPPVCSYRKKNSMNEG-----SKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLF
                **********:***::.      .. *****:***.****:** ::* *.**. **: **

AT1G15580.1     GCYINFDDTLK---ESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRSCNRG---
pt028706_POPTR_ GCF-GIGKALKDTDDCEYVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFGL
gm017314_Glyma0 GSY-GMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRSDAKGFGL
                *.: .: .:**   :.* *************.********: ***********  :*   

AT1G15580.1     -----------------
pt028706_POPTR_ QPRGALQQGNISKDDRD
gm017314_Glyma0 QPKGSL-KGFIESAAK-
BoxShade v3.31 C (beta, 970507) Output
AT1G15580.1     M A N E S N N L G L E I T E L R L G L P G D I V V S G E S I S G K K R A S P E V E I D L K C E P A K K - - - - - - S Q V
pt028706_POPTR_    M A Q P - - - L G L E I T E L R L G P P G S E N G P - - - K N E K K R V F S E L S G E A N S T T D G R K T Q T T - S Q V
gm017314_Glyma0    M A K E G - - L G L E I T E L R L G L P D A E H V T V V N K N E K K R A F S Q I D D E N S S S G G D R K I K T N K S Q V
 
AT1G15580.1     V G W P P V C S Y R R K N S L E R T - - - - - K S S Y V K V S V D G A A F L R K I D L E M Y K C Y Q D L A S A L Q I L F
pt028706_POPTR_    V G W P P V C S Y R K K N S F N E K D S H E T S K I Y V K V S M D G A P F L R K V D L G M H K E Y S D L V V A L E K L F
gm017314_Glyma0    V G W P P V C S Y R K K N S M N E G - - - - - S K M Y V K V S M D G A P F L R K I D L G L H K G Y S D L A L A L D K L F
 
AT1G15580.1     G C Y I N F D D T L K - - - E S E C V P I Y E D K D G D W M L A G D V P W E M F L G S C K R L R I M K R S C N R G - - -
pt028706_POPTR_    G C F - G I G K A L K D T D D C E Y V P I Y E D K D G D W M L V G D V P W E M F I E S C K R L R I M K R S E A K G F G L
gm017314_Glyma0    G S Y - G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E S C K R L R I M K R S D A K G F G L
 
AT1G15580.1     - - - - - - - - - - - - - - - - -
pt028706_POPTR_    Q P R G A L Q Q G N I S K D D R D
gm017314_Glyma0    Q P K G S L - K G F I E S A A K -
 
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