fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G17950.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm010780 not found in 297aa AT1G73410.1 not_not 0.4 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G17950.1     ----------MMCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQ
gm010780_Glyma0 MEDSSAGEDTRTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ
                            *.*************:****:*.:***:**:**.**************

AT1G17950.1     LDPRINRNPFTEEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERS
gm010780_Glyma0 LDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS
                *******.************:******:*::***:*******************: **:*

AT1G17950.1     KL------RPRGLGHDGTVAATGMIGNYKDCDKERRLA------------------TTTA
gm010780_Glyma0 KLYMLFSTTRFGL-ENGRFFDFRSLDNNKDDDNNYRIVSDTTSSTSLASWNFASVPTTTS
                **         ** .:* .     :.* ** *:: *:.                  ***:

AT1G17950.1     IN---------------------FPY-QFSHINHFQVLKEFLTGKIGFRNSTTPIQE--G
gm010780_Glyma0 TTTKGARDYFNTSRSSSVYLSEIYPNPAFSLPNYKRVV------------PTSPFRTFLG
                 .                     :*   **  *: :*:            .*:*::   *

AT1G17950.1     AIDQ-----TKRP-MEFYNFLQVNTDSKIHELIDNSRKDEEE---DVDQNNRIPNENCVP
gm010780_Glyma0 SSDHHDGWIIKRDLMSFCDNNNNNSSSTFSKLKASTEKDHQQQQTNEDATNVEPKE--VP
                : *:      **  *.* :  : *:.*.: :*  .:.**.::   : * .*  *:*  **

AT1G17950.1     FFDFLSVGNSASQGLC
gm010780_Glyma0 FIDFLGVGVSSS----
                *:***.** *:*
BoxShade v3.31 C (beta, 970507) Output
AT1G17950.1     - - - - - - - - - - M M C S R G H W R P A E D E K L R E L V E Q F G P H N W N A I A Q K L S G R S G K S C R L R W F N Q
gm010780_Glyma0    M E D S S A G E D T R T C P R G H W R P A E D E K L R Q L V E Q Y G A Q N W N S I A E K L Q G R S G K S C R L R W F N Q
 
AT1G17950.1     L D P R I N R N P F T E E E E E R L L A S H R I H G N R W S V I A R F F P G R T D N A V K N H W H V I M A R R G R E R S
gm010780_Glyma0    L D P R I N R R P F T E E E E E R L L A A H R I H G N K W A L I A R L F P G R T D N A V K N H W H V I M A R K Q R E Q S
 
AT1G17950.1     K L - - - - - - R P R G L G H D G T V A A T G M I G N Y K D C D K E R R L A - - - - - - - - - - - - - - - - - - T T T A
gm010780_Glyma0    K L Y M L F S T T R F G L - E N G R F F D F R S L D N N K D D D N N Y R I V S D T T S S T S L A S W N F A S V P T T T S
 
AT1G17950.1     I N - - - - - - - - - - - - - - - - - - - - - F P Y - Q F S H I N H F Q V L K E F L T G K I G F R N S T T P I Q E - - G
gm010780_Glyma0    T T T K G A R D Y F N T S R S S S V Y L S E I Y P N P A F S L P N Y K R V V - - - - - - - - - - - - P T S P F R T F L G
 
AT1G17950.1     A I D Q - - - - - T K R P - M E F Y N F L Q V N T D S K I H E L I D N S R K D E E E - - - D V D Q N N R I P N E N C V P
gm010780_Glyma0    S S D H H D G W I I K R D L M S F C D N N N N N S S S T F S K L K A S T E K D H Q Q Q Q T N E D A T N V E P K E - - V P
 
AT1G17950.1     F F D F L S V G N S A S Q G L C
gm010780_Glyma0    F I D F L G V G V S S S - - - -
 
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