fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G18400.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt024172 not found in 273aa AT1G73830.1 1st_not 0.508997429 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G18400.1     MANFENLSSDFQT--------------IAMDIYSSITQAADLNNNNSNLHFQTFHPSSTS
pt024172_POPTR_ MADF---TADLQSFRPPFPFLDIDPSMVALSQFTEVSQAILDNPSVNNIH--SFMPFTS-
                **:*   ::*:*:              :*:. ::.::**   * . .*:*  :* * :: 

AT1G18400.1     LESLFLHHHQQQLLHFPGNSPDSSNNFSSTSSFLHSDHNIV---------------DETK
pt024172_POPTR_ -DNFFSH----QAPEFPGN---LAEGFAGI--FHQNDQTVMPVSQPFTTPGNESEFQESK
                 :.:* *    *  .****    ::.*:.   * :.*:.::               :*:*

AT1G18400.1     KRKALLPTLSSSETSGVSDNTNVIATETGSLRR----GKRLKKKKEEEDEKEREVVHVRA
pt024172_POPTR_ KRKA----MDVSESSSMNSSPQV--SESGSKRRNVNSSRRGKGVKSNEDGKPKDVVHVRA
                ****    :. **:*.:....:*  :*:** **    .:* *  *.:** * ::******

AT1G18400.1     RRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEF
pt024172_POPTR_ RRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEF
                *****************************:******:****.******************

AT1G18400.1     LSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGRQTRDGSPVF-HL-STWSL
pt024172_POPTR_ LSMKLTAASTFYDFNAETDAIETMQRAKAQEAKELQRAMREGSGGFAHIHSTWSL
                *********:*****:****:::******:*: *: *  *:**  * *: *****
BoxShade v3.31 C (beta, 970507) Output
AT1G18400.1     M A N F E N L S S D F Q T - - - - - - - - - - - - - - I A M D I Y S S I T Q A A D L N N N N S N L H F Q T F H P S S T S
pt024172_POPTR_    M A D F - - - T A D L Q S F R P P F P F L D I D P S M V A L S Q F T E V S Q A I L D N P S V N N I H - - S F M P F T S -
 
AT1G18400.1     L E S L F L H H H Q Q Q L L H F P G N S P D S S N N F S S T S S F L H S D H N I V - - - - - - - - - - - - - - - D E T K
pt024172_POPTR_    - D N F F S H - - - - Q A P E F P G N - - - L A E G F A G I - - F H Q N D Q T V M P V S Q P F T T P G N E S E F Q E S K
 
AT1G18400.1     K R K A L L P T L S S S E T S G V S D N T N V I A T E T G S L R R - - - - G K R L K K K K E E E D E K E R E V V H V R A
pt024172_POPTR_    K R K A - - - - M D V S E S S S M N S S P Q V - - S E S G S K R R N V N S S R R G K G V K S N E D G K P K D V V H V R A
 
AT1G18400.1     R R G Q A T D S H S L A E R V R R G K I N E R L R C L Q D M V P G C Y K A M G M A T M L D E I I N Y V Q S L Q N Q V E F
pt024172_POPTR_    R R G Q A T D S H S L A E R V R R G K I N E R L R C L Q D I V P G C Y K T M G M A V M L D E I I N Y V Q S L Q N Q V E F
 
AT1G18400.1     L S M K L T A A S S F Y D F N S E T D A V D S M Q R A K A R E T V E M G R Q T R D G S P V F - H L - S T W S L
pt024172_POPTR_    L S M K L T A A S T F Y D F N A E T D A I E T M Q R A K A Q E A K E L Q R A M R E G S G G F A H I H S T W S L
 
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