fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G18835.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003370 not found in 156aa AT3G28917.1 1st_not 0.710059171 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G18835.1     ------------------------------------------------------------
pt003370_POPTR_ MEGLYISVTTKSNFLLLSLLPLSIFTPYSNYRSVFQLENSSLAYQGFEGEGSGEELGTSQ
                                                                            

AT1G18835.1     MKKRQVVIKQ----RKSSYTMTSSSSNVRYVECQKNHAANIGGYAVDGCREFMASGGDD-
pt003370_POPTR_ MRKRQVVVRRSEEPSRSSTTSSFTIRNVKYGECQKNHAAGVGGYAVDGCREFMASGEEGT
                *:*****:::     :** * : :  **:* ********.:*************** :. 

AT1G18835.1     --ALTCAACGCHRNFHRREVDTEVVCEYSPPNANN-
pt003370_POPTR_ AAALTCAACGCHRNFHRREVETEVACDCSSPSSNGN
                  ******************:***.*: *.*.:*.
BoxShade v3.31 C (beta, 970507) Output
AT1G18835.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt003370_POPTR_    M E G L Y I S V T T K S N F L L L S L L P L S I F T P Y S N Y R S V F Q L E N S S L A Y Q G F E G E G S G E E L G T S Q
 
AT1G18835.1     M K K R Q V V I K Q - - - - R K S S Y T M T S S S S N V R Y V E C Q K N H A A N I G G Y A V D G C R E F M A S G G D D -
pt003370_POPTR_    M R K R Q V V V R R S E E P S R S S T T S S F T I R N V K Y G E C Q K N H A A G V G G Y A V D G C R E F M A S G E E G T
 
AT1G18835.1     - - A L T C A A C G C H R N F H R R E V D T E V V C E Y S P P N A N N -
pt003370_POPTR_    A A A L T C A A C G C H R N F H R R E V E T E V A C D C S S P S S N G N
 
0