fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19350.1 DVAMEDLELTLGNGKA at 322/335 in AT1G19350.4
DVAMEDLELTLGNGKA at 344/357 in AT1G19350.3
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.5
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.1
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.6
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt039869 EVGLDDLELTLGGGKA in 305/317 AT1G75080.2 1st_not 0.632162661 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G19350.1     MTSDGATSTSAAAAAAAMATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPK
pt039869_POPTR_ MTSDGATSTSAAAAA---TTRRKPSWRERENNRRRERRRRAIAAKIFTGLRAQGNYNLPK
                ***************   :**********************:****:*************

AT1G19350.1     HCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPLPGDMAGSSSRATPYSSHNQSPLSSTFD
pt039869_POPTR_ YCDNNEVLKALCAEAGWVVEEDGTTYRKGHRPPPIEIVGSSMRVTPYSSQNPSPLSSSFP
                :***********:*****************:* * ::.*** *.*****:* *****:* 

AT1G19350.1     SPILSYQVSPSSSSFPSPSRVGDPHNISTIFPFLRNGGIPSSLPPLRISNSAPVTPPVSS
pt039869_POPTR_ SPIPSYQVSPSSSSFPSPTR-GDNNVSSNLLPFLQS-AIPLSLPPLRISNSAPVTPPLSS
                *** **************:* ** :  *.::***:. .** ****************:**

AT1G19350.1     PTSRNPKPLPTWESFTKQSMSMAAKQSMTSLNYPFYAVSAPASPTHHRQFHAPATIPECD
pt039869_POPTR_ PTSRNPKPIPNWD--------FIAKQSMASFSYPFNAVSAPASPT-HRQFHAPATIPECD
                ********:*.*:        : *****:*:.*** ********* **************

AT1G19350.1     ESDSSTVDSGHWISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLSPNTAAIQEIGQSSE
pt039869_POPTR_ ESDSSTVESGQWISFQKFA---PSVAAAMPTSPTYNLVKPVARQILSNN-LVKDNGMSMD
                *******:**:********   *  *: :*****:*****..:*: .*.  ::: * * :

AT1G19350.1     FKFENSQVKPWEGERIHDVAMEDLELTLGNGKAHS
pt039869_POPTR_ FEFGSEQVKPWEGERIHEVGLDDLELTLGGGKARS
                *:* ..***********:*.::*******.***:*
BoxShade v3.31 C (beta, 970507) Output
AT1G19350.1     M T S D G A T S T S A A A A A A A M A T R R K P S W R E R E N N R R R E R R R R A V A A K I Y T G L R A Q G N Y N L P K
pt039869_POPTR_    M T S D G A T S T S A A A A A - - - T T R R K P S W R E R E N N R R R E R R R R A I A A K I F T G L R A Q G N Y N L P K
 
AT1G19350.1     H C D N N E V L K A L C S E A G W V V E E D G T T Y R K G H K P L P G D M A G S S S R A T P Y S S H N Q S P L S S T F D
pt039869_POPTR_    Y C D N N E V L K A L C A E A G W V V E E D G T T Y R K G H R P P P I E I V G S S M R V T P Y S S Q N P S P L S S S F P
 
AT1G19350.1     S P I L S Y Q V S P S S S S F P S P S R V G D P H N I S T I F P F L R N G G I P S S L P P L R I S N S A P V T P P V S S
pt039869_POPTR_    S P I P S Y Q V S P S S S S F P S P T R - G D N N V S S N L L P F L Q S - A I P L S L P P L R I S N S A P V T P P L S S
 
AT1G19350.1     P T S R N P K P L P T W E S F T K Q S M S M A A K Q S M T S L N Y P F Y A V S A P A S P T H H R Q F H A P A T I P E C D
pt039869_POPTR_    P T S R N P K P I P N W D - - - - - - - - F I A K Q S M A S F S Y P F N A V S A P A S P T - H R Q F H A P A T I P E C D
 
AT1G19350.1     E S D S S T V D S G H W I S F Q K F A Q Q Q P F S A S M V P T S P T F N L V K P A P Q Q L S P N T A A I Q E I G Q S S E
pt039869_POPTR_    E S D S S T V E S G Q W I S F Q K F A - - - P S V A A A M P T S P T Y N L V K P V A R Q I L S N N - L V K D N G M S M D
 
AT1G19350.1     F K F E N S Q V K P W E G E R I H D V A M E D L E L T L G N G K A H S
pt039869_POPTR_    F E F G S E Q V K P W E G E R I H E V G L D D L E L T L G G G K A R S
 
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