fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19350.1 DVAMEDLELTLGNGKA at 322/335 in AT1G19350.4
DVAMEDLELTLGNGKA at 344/357 in AT1G19350.3
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.5
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.1
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.6
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb023996 not found in 517aa AT1G75080.2 1st_not 0.415896487 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G19350.1     ---------------------MTSDGA---------------------------------
Sb023996_Sorbi1 TTLSTPLQRASRLPPPPPPPPLPRSGSAVASLPPLPPPLVNTTVQYATHHLSIKEKRRQV
                                     :. .*:                                 

AT1G19350.1     -----------TSTSAAAAAAAMATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGN
Sb023996_Sorbi1 CGELGAEHQSMTSGAAAAAAAAGALGRTPTWKERENNKRRERRRRAIAAKIFTGLRALGN
                           ** :******* *  *.*:*:*****:********:****:***** **

AT1G19350.1     YNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPLPGDMAGSSSRATPYSSHNQSPL
Sb023996_Sorbi1 YKLPKHCDNNEVLKALCREAGWVVEDDGTTYRKGCKPPPGMMSPCS------SSQLLSAP
                *:*************** *******:******** ** ** *: .*      **:  *. 

AT1G19350.1     SSTFDSPILSYQVSPSSSSFPSPSRV----GDPHN---------------ISTIFPFLRN
Sb023996_Sorbi1 SSSFPSPVPSYHASPASSSFPSPTRLDHSSGSNHHHHHNPGPTAAAAAAAASSLLPFLRS
                **:* **: **:.**:*******:*:    *. *:                *:::****.

AT1G19350.1     GGIPSSLPPLRISNSAPVTPPVSSPT--SRNPKPL--PTWESFTKQSMSMAAKQSMTSLN
Sb023996_Sorbi1 --LP-NLPPLRVSSSAPVTPPLSSPTAASRPPTKVRKPDWDAAVAD-----------PFR
                  :* .*****:*.*******:****  ** *. :  * *:: . :           .:.

AT1G19350.1     YPFYAVSAPASPTHHRQFHAPATIPECDESD-SSTVDSGHWISFQKFAQQQPFSASMVPT
Sb023996_Sorbi1 HPFFAVSAPASPTRARRREHPDTIPECDESDVCSTVDSGRWISFQVGA------ATTAPA
                :**:*********: *: . * ********* .******:*****  *      *: .*:

AT1G19350.1     SPTFNLVKPAPQQLSPNTA------AIQEIGQS----SEFKFENSQVKPWEGERIHDVAM
Sb023996_Sorbi1 SPTYNLVHPAGGGASASNSMELDGMAAADIGGRGGGPAEFEFDKGRVTPWEGERIHEVAA
                ***:***:**    *...:      *  :**      :**:*::.:*.********:** 

AT1G19350.1     EDLELTLGNGKAHS
Sb023996_Sorbi1 EELELTLGVGAK--
                *:****** *
BoxShade v3.31 C (beta, 970507) Output
AT1G19350.1     - - - - - - - - - - - - - - - - - - - - - M T S D G A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Sb023996_Sorbi1    T T L S T P L Q R A S R L P P P P P P P P L P R S G S A V A S L P P L P P P L V N T T V Q Y A T H H L S I K E K R R Q V
 
AT1G19350.1     - - - - - - - - - - - T S T S A A A A A A A M A T R R K P S W R E R E N N R R R E R R R R A V A A K I Y T G L R A Q G N
Sb023996_Sorbi1    C G E L G A E H Q S M T S G A A A A A A A A G A L G R T P T W K E R E N N K R R E R R R R A I A A K I F T G L R A L G N
 
AT1G19350.1     Y N L P K H C D N N E V L K A L C S E A G W V V E E D G T T Y R K G H K P L P G D M A G S S S R A T P Y S S H N Q S P L
Sb023996_Sorbi1    Y K L P K H C D N N E V L K A L C R E A G W V V E D D G T T Y R K G C K P P P G M M S P C S - - - - - - S S Q L L S A P
 
AT1G19350.1     S S T F D S P I L S Y Q V S P S S S S F P S P S R V - - - - G D P H N - - - - - - - - - - - - - - - I S T I F P F L R N
Sb023996_Sorbi1    S S S F P S P V P S Y H A S P A S S S F P S P T R L D H S S G S N H H H H H N P G P T A A A A A A A A S S L L P F L R S
 
AT1G19350.1     G G I P S S L P P L R I S N S A P V T P P V S S P T - - S R N P K P L - - P T W E S F T K Q S M S M A A K Q S M T S L N
Sb023996_Sorbi1    - - L P - N L P P L R V S S S A P V T P P L S S P T A A S R P P T K V R K P D W D A A V A D - - - - - - - - - - - P F R
 
AT1G19350.1     Y P F Y A V S A P A S P T H H R Q F H A P A T I P E C D E S D - S S T V D S G H W I S F Q K F A Q Q Q P F S A S M V P T
Sb023996_Sorbi1    H P F F A V S A P A S P T R A R R R E H P D T I P E C D E S D V C S T V D S G R W I S F Q V G A - - - - - - A T T A P A
 
AT1G19350.1     S P T F N L V K P A P Q Q L S P N T A - - - - - - A I Q E I G Q S - - - - S E F K F E N S Q V K P W E G E R I H D V A M
Sb023996_Sorbi1    S P T Y N L V H P A G G G A S A S N S M E L D G M A A A D I G G R G G G P A E F E F D K G R V T P W E G E R I H E V A A
 
AT1G19350.1     E D L E L T L G N G K A H S
Sb023996_Sorbi1    E E L E L T L G V G A K - -
 
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