fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19350.1 DVAMEDLELTLGNGKA at 322/335 in AT1G19350.4
DVAMEDLELTLGNGKA at 344/357 in AT1G19350.3
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.5
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.1
DVAMEDLELTLGNGKA at 322/335 in AT1G19350.6
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm013966 EVGLDDLELTLGSGKT in 308/320 AT1G19350.6 1st_not 0.550831792 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G19350.1     MTSDGATSTSAAAAAAAMATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPK
gm013966_Glyma0 MTSDGATS--------AATHRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPK
                ********        * : *********************:*****:************

AT1G19350.1     HCDNNEVLKALCSEAGWVVEEDGTTYRKGHK-PLPGDMAGSSSRATPYSSHNQSPLSSTF
gm013966_Glyma0 HCDNNEVLKALCAEAGWTVEEDGTTYRKGCRAPLPGDGVGTSTRNTPFSSQNPSPLSSSF
                ************:****.*********** : ***** .*:*:* **:**:* *****:*

AT1G19350.1     DSPILSYQVSPSSSSFPSPSRVGDPHNISTIFPFLRNGGIPSSLPPLRISNSAPVTPPVS
gm013966_Glyma0 PSPIPSYQVSPSSSSFPSPSRL-DANNPSNLIPYIRH-AFPSSLPPLRISNSAPVTPPLS
                 *** ****************: *.:* *.::*::*: .:******************:*

AT1G19350.1     SPTSRNPKPLPTWESFTKQSMSMAAKQSMTSLNYPFYAVSAPASPTHHRQFHAPATIPEC
gm013966_Glyma0 SPTSRNPKPIPTWDSIAKASMASSFNHS----HHPFFAASAPASPT-HRHLYAPPTIPEC
                *********:***:*::* **: : ::*    ::**:*.******* **:::**.*****

AT1G19350.1     DESDSSTVDSGHWISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQ-------LSPNTAAI
gm013966_Glyma0 DESDTSTVESGQWLNFQAFAP----SVSAVPISPTMNFIKPVVSQQHKHNLNLSGN--GI
                ****:***:**:*:.** **     *.* ** ***:*::**. .*       ** *  .*

AT1G19350.1     QEIGQSSEFKFENSQVKPWEGERIHDVAMEDLELTLGNGKAHS
gm013966_Glyma0 QEM-RISEPEFA-MQVKPWVGERIHEVGLDDLELTLGSGKTPA
                **: : ** :*   ***** *****:*.::*******.**: :
BoxShade v3.31 C (beta, 970507) Output
AT1G19350.1     M T S D G A T S T S A A A A A A A M A T R R K P S W R E R E N N R R R E R R R R A V A A K I Y T G L R A Q G N Y N L P K
gm013966_Glyma0    M T S D G A T S - - - - - - - - A A T H R R K P S W R E R E N N R R R E R R R R A I A A K I Y S G L R A Q G N Y N L P K
 
AT1G19350.1     H C D N N E V L K A L C S E A G W V V E E D G T T Y R K G H K - P L P G D M A G S S S R A T P Y S S H N Q S P L S S T F
gm013966_Glyma0    H C D N N E V L K A L C A E A G W T V E E D G T T Y R K G C R A P L P G D G V G T S T R N T P F S S Q N P S P L S S S F
 
AT1G19350.1     D S P I L S Y Q V S P S S S S F P S P S R V G D P H N I S T I F P F L R N G G I P S S L P P L R I S N S A P V T P P V S
gm013966_Glyma0    P S P I P S Y Q V S P S S S S F P S P S R L - D A N N P S N L I P Y I R H - A F P S S L P P L R I S N S A P V T P P L S
 
AT1G19350.1     S P T S R N P K P L P T W E S F T K Q S M S M A A K Q S M T S L N Y P F Y A V S A P A S P T H H R Q F H A P A T I P E C
gm013966_Glyma0    S P T S R N P K P I P T W D S I A K A S M A S S F N H S - - - - H H P F F A A S A P A S P T - H R H L Y A P P T I P E C
 
AT1G19350.1     D E S D S S T V D S G H W I S F Q K F A Q Q Q P F S A S M V P T S P T F N L V K P A P Q Q - - - - - - - L S P N T A A I
gm013966_Glyma0    D E S D T S T V E S G Q W L N F Q A F A P - - - - S V S A V P I S P T M N F I K P V V S Q Q H K H N L N L S G N - - G I
 
AT1G19350.1     Q E I G Q S S E F K F E N S Q V K P W E G E R I H D V A M E D L E L T L G N G K A H S
gm013966_Glyma0    Q E M - R I S E P E F A - M Q V K P W V G E R I H E V G L D D L E L T L G S G K T P A
 
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