fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19510.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt038744 not found in 99aa AT1G75250.2 1st_not 0.627118644 II
Pt019385 not found in 100aa AT1G19510.1 not_1st 0.564971751 II
Pt036657 not found in 90aa AT1G19510.1 not_1st 0.485875706 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G19510.1     MA---SSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGS-KSAEEVKRHYDI
pt038744_POPTR_ MSY-FTSSNGSGSSWTAKQNKLFEKALAVYDKDTPDRWQNVAKAVGG-KSPEEVKRHYDR
pt019385_POPTR_ MSSSHQTPRNSSSSWTPRENKLFEKALALFDKDTPDRWQNIAKAVGGVKSAEEMKRHYEI
pt036657_POPTR_ MGS--SSFPQPNSNWSEQKNKLFENALAIYDKDSPDRWRNIASFVGE-TTEEEVKKQYEI
                *.    :   ..*.*: ::**:**.***::***:****:*:*. **  .: **:*::*: 

AT1G19510.1     LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ-
pt038744_POPTR_ LVEDLVYIESGQAPLPNYKP--SGSNGRGLVE-EQRLTRNLKLQ-
pt019385_POPTR_ LIEDLKHIESGRVPIPNYKSSRSYSNTNE----EERLLKYVKLQ-
pt036657_POPTR_ LLDDIKRIESDQVPLPNYKNH------------EESIKENSNMSN
                *::*:  **.. .*:*:**              :  : .  .:.
BoxShade v3.31 C (beta, 970507) Output
AT1G19510.1     M A - - - S S S M S S S S S W T S K Q N K M F E R A L A V Y D K D T P D R W Q N V A K A V G S - K S A E E V K R H Y D I
pt038744_POPTR_    M S Y - F T S S N G S G S S W T A K Q N K L F E K A L A V Y D K D T P D R W Q N V A K A V G G - K S P E E V K R H Y D R
pt019385_POPTR_    M S S S H Q T P R N S S S S W T P R E N K L F E K A L A L F D K D T P D R W Q N I A K A V G G V K S A E E M K R H Y E I
pt036657_POPTR_    M G S - - S S F P Q P N S N W S E Q K N K L F E N A L A I Y D K D S P D R W R N I A S F V G E - T T E E E V K K Q Y E I
 
AT1G19510.1     L V E D L M N I E Q D L V P L P K Y K T V D V G S K S R G I D D F D L R L M K N M R I Q -
pt038744_POPTR_    L V E D L V Y I E S G Q A P L P N Y K P - - S G S N G R G L V E - E Q R L T R N L K L Q -
pt019385_POPTR_    L I E D L K H I E S G R V P I P N Y K S S R S Y S N T N E - - - - E E R L L K Y V K L Q -
pt036657_POPTR_    L L D D I K R I E S D Q V P L P N Y K N H - - - - - - - - - - - - E E S I K E N S N M S N
 
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