fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19510.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt018851 not found in 99aa AT4G39250.1 not_not 0.604519774 III
Pt000040 not found in 84aa AT1G75250.1 not_not 0.576271186 III
Pt021017 not found in 87aa AT2G21650.1 not_not 0.570621468 III
Pt022324 not found in 113aa AT4G39250.1 not_not 0.553672316 III
Pt000491 not found in 85aa AT4G39250.1 not_not 0.553672316 III
Pt037449 not found in 78aa AT4G39250.1 not_not 0.553672316 III
Pt039887 not found in 96aa AT1G75250.2 not_not 0.491525423 III
Pt036738 not found in 92aa AT4G39250.1 not_not 0.474576271 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G19510.1     MASSSM-SS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGS-KSAEEVKRHYD
pt000491_POPTR_ MASNSLNSSRNCSSSWTPKQNKLFEKALALYDKDTPDRWHNVAKAVGG-KSAEEVERHYE
pt018851_POPTR_ MASSSV-SSRG-SGSWTAQQNKAFERALAVYDRDTPDRWHNVARAVGG-KTAEEVKRHYE
pt000040_POPTR_ MAYFT--SSHGSSSSWTPKQNKLFEKALAVYDKDTPDRWQNVAKAVGG-KSAEEVKMHYD
pt036738_POPTR_ MASSSFPQP---STNWSAEQNKLFENALAIYDKDTPDRWGKIAKIVKG-TTEDEVKQQYE
pt039887_POPTR_ MASG--------SSNWTSKQNKLFENALAIYDQESPDRWHNLARAVG--KTVEEVKKHYQ
pt022324_POPTR_ MSSSYQ-ASRNSRSAWTPRENKLFEKALALFDKDTPDRWQNIAKAVGGVKSAEEVKKHYE
pt021017_POPTR_ MASSSM-SSRG-SGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGG-KTAEEVKRHYE
pt037449_POPTR_ MSSNSL-------TSWTPKQNKLFEKALALHDKDTPDRWHNVAKAVGG-KSAEEVKRHYE
                *:             *: .:** **.***:.*:::**** ::*: *   .: :**: :*:

AT1G19510.1     ILVEDLMNIEQDLVPLPKY-KTVDVGSKSRGIDDFDLRLMKNMRIQ------------
pt000491_POPTR_ ILIKDVREIESGRVPFPNY-RSSG-NSN------------------------------
pt018851_POPTR_ ILVEDVKHIESGRVPFPNY-RTTGANGHSKTGEE---KMMKNMKLQ------------
pt000040_POPTR_ RLVEDLTYIESGQAPLPNY-KPSGSNST------------------------------
pt036738_POPTR_ ILLDDIKSIESDKVPLPNY-KNEGSSKENIIGNEEER---------------------
pt039887_POPTR_ MLVEDVQQIEAGEIPLPNYTRRSGASNKSYHCNDDQAQRVKNLNLN------------
pt022324_POPTR_ ILIEDLQHIESGRIPIPKY-KSSGSCNNTNEEES---EVQDSDRLPIYVCGKWMLLSS
pt021017_POPTR_ LLVEDVKHIESGHVPFPNY-RTTGANGHARG---------------------------
pt037449_POPTR_ ILIKDVREIESGRVPFPNY-RSSG-NGN------------------------------
                 *:.*:  ** .  *:*:* :  .
BoxShade v3.31 C (beta, 970507) Output
AT1G19510.1     M A S S S M - S S - - - S S S W T S K Q N K M F E R A L A V Y D K D T P D R W Q N V A K A V G S - K S A E E V K R H Y D
pt000491_POPTR_    M A S N S L N S S R N C S S S W T P K Q N K L F E K A L A L Y D K D T P D R W H N V A K A V G G - K S A E E V E R H Y E
pt018851_POPTR_    M A S S S V - S S R G - S G S W T A Q Q N K A F E R A L A V Y D R D T P D R W H N V A R A V G G - K T A E E V K R H Y E
pt000040_POPTR_    M A Y F T - - S S H G S S S S W T P K Q N K L F E K A L A V Y D K D T P D R W Q N V A K A V G G - K S A E E V K M H Y D
pt036738_POPTR_    M A S S S F P Q P - - - S T N W S A E Q N K L F E N A L A I Y D K D T P D R W G K I A K I V K G - T T E D E V K Q Q Y E
pt039887_POPTR_    M A S G - - - - - - - - S S N W T S K Q N K L F E N A L A I Y D Q E S P D R W H N L A R A V G - - K T V E E V K K H Y Q
pt022324_POPTR_    M S S S Y Q - A S R N S R S A W T P R E N K L F E K A L A L F D K D T P D R W Q N I A K A V G G V K S A E E V K K H Y E
pt021017_POPTR_    M A S S S M - S S R G - S G S W T V Q Q N K A F E R A L A V Y D R D T P D R W Y N V A R A V G G - K T A E E V K R H Y E
pt037449_POPTR_    M S S N S L - - - - - - - T S W T P K Q N K L F E K A L A L H D K D T P D R W H N V A K A V G G - K S A E E V K R H Y E
 
AT1G19510.1     I L V E D L M N I E Q D L V P L P K Y - K T V D V G S K S R G I D D F D L R L M K N M R I Q - - - - - - - - - - - -
pt000491_POPTR_    I L I K D V R E I E S G R V P F P N Y - R S S G - N S N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt018851_POPTR_    I L V E D V K H I E S G R V P F P N Y - R T T G A N G H S K T G E E - - - K M M K N M K L Q - - - - - - - - - - - -
pt000040_POPTR_    R L V E D L T Y I E S G Q A P L P N Y - K P S G S N S T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt036738_POPTR_    I L L D D I K S I E S D K V P L P N Y - K N E G S S K E N I I G N E E E R - - - - - - - - - - - - - - - - - - - - -
pt039887_POPTR_    M L V E D V Q Q I E A G E I P L P N Y T R R S G A S N K S Y H C N D D Q A Q R V K N L N L N - - - - - - - - - - - -
pt022324_POPTR_    I L I E D L Q H I E S G R I P I P K Y - K S S G S C N N T N E E E S - - - E V Q D S D R L P I Y V C G K W M L L S S
pt021017_POPTR_    L L V E D V K H I E S G H V P F P N Y - R T T G A N G H A R G - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt037449_POPTR_    I L I K D V R E I E S G R V P F P N Y - R S S G - N G N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
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