fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19510.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb033118 not found in 238aa AT1G75250.1 1st_not 0.502824858 II
Sb008392 not found in 98aa AT2G21650.1 not_not 0.491525423 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G19510.1     ---------------MASSSMSSS-SS----WTSKQNKMF--------------------
Sb008392_Sorbi1 ---------------MATMSLSSTRAQ----WTAKQNKLF--------------------
Sb033118_Sorbi1 FLLSHHYLQLQLGPLHACCPINPIYTHVCIFWIIDRSSYYVHHLRRSSDVSACMSGGPVA
                                *  .:..  :     *  .:.. :                    

AT1G19510.1     -------ERALAVYDKD---------TPDRWQNVAKAV-GSKSAEEVKRHYDILVEDLMN
Sb008392_Sorbi1 -------EQALAVYDRD---------TPDRWHNIARAVGGGKSADEVRRYYELLVKDVEH
Sb033118_Sorbi1 GGAAVGREGHLAGLDVADVLLQQVVVAPDVLGGLAAADGAGDVVPPVRR---VLVVNGQR
                       *  **  *           :**   .:* *  ... .  *:*   :** :  .

AT1G19510.1     IEQDLV----PLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ-----
Sb008392_Sorbi1 IEAGKV----PFPAYR-CPAGYDADRIDRSP--ALKHLKI------
Sb033118_Sorbi1 LLEQLVLLRRPLRARR-----CARHRLHRRH--SVAFLELAREEGS
                :    *    *:   :          :.      :  :.:
BoxShade v3.31 C (beta, 970507) Output
AT1G19510.1     - - - - - - - - - - - - - - - M A S S S M S S S - S S - - - - W T S K Q N K M F - - - - - - - - - - - - - - - - - - - -
Sb008392_Sorbi1    - - - - - - - - - - - - - - - M A T M S L S S T R A Q - - - - W T A K Q N K L F - - - - - - - - - - - - - - - - - - - -
Sb033118_Sorbi1    F L L S H H Y L Q L Q L G P L H A C C P I N P I Y T H V C I F W I I D R S S Y Y V H H L R R S S D V S A C M S G G P V A
 
AT1G19510.1     - - - - - - - E R A L A V Y D K D - - - - - - - - - T P D R W Q N V A K A V - G S K S A E E V K R H Y D I L V E D L M N
Sb008392_Sorbi1    - - - - - - - E Q A L A V Y D R D - - - - - - - - - T P D R W H N I A R A V G G G K S A D E V R R Y Y E L L V K D V E H
Sb033118_Sorbi1    G G A A V G R E G H L A G L D V A D V L L Q Q V V V A P D V L G G L A A A D G A G D V V P P V R R - - - V L V V N G Q R
 
AT1G19510.1     I E Q D L V - - - - P L P K Y K T V D V G S K S R G I D D F D L R L M K N M R I Q - - - - -
Sb008392_Sorbi1    I E A G K V - - - - P F P A Y R - C P A G Y D A D R I D R S P - - A L K H L K I - - - - - -
Sb033118_Sorbi1    L L E Q L V L L R R P L R A R R - - - - - C A R H R L H R R H - - S V A F L E L A R E E G S
 
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