fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G19510.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm032707 not found in 130aa AT4G39250.1 1st_not 0.593220338 II
Gm030637 not found in 91aa AT1G19510.1 not_1st 0.587570621 II
Gm001766 not found in 69aa AT1G19510.1 not_1st 0.485875706 II
Gm008745 not found in 91aa AT1G19510.1 not_1st 0.446327683 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G19510.1     MASSSMS----SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI
gm032707_Glyma1 MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSADEVKRHYEI
gm008745_Glyma0 MG-------------WTREENRRFEDALAVHGPNDPNRWQHVANAVGGKSVQEVKMHYEI
gm030637_Glyma1 MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI
gm001766_Glyma0 MA-----------SSWTPRQNKLFEEALAIHDRETPDRWQNVARVV-GKSVEDVKRHYEI
                *.             ** .:*: ** *** :. : *:***:**..* .**.::** **:*

AT1G19510.1     LVEDLMNIEQDLVPLPKYKT--VDVGSKSRGIDDFD----------------------LR
gm032707_Glyma1 LLEDLRHIESGHVPLPKYK----STGSST-NVEEEERKEKKRPLTKIIDTFFQFLNVFTR
gm008745_Glyma0 LQEDVIRIERDQIPLPSYRGAAININARQ-NIDNEQR-------TTIIK---------LN
gm030637_Glyma1 LLEDLRHIESGRVPLPKYK----STGSST-NVDEEE------------------------
gm001766_Glyma0 LKEDIKRIERGQIPLPNY------TGS---------------------------------
                * **: .** . :***.*       .:                                 

AT1G19510.1     LMKNMRIQ-------
gm032707_Glyma1 HFQNSTLNYLVTYSI
gm008745_Glyma0 L--------------
gm030637_Glyma1 ---------------
gm001766_Glyma0 ---------------
BoxShade v3.31 C (beta, 970507) Output
AT1G19510.1     M A S S S M S - - - - S S S S W T S K Q N K M F E R A L A V Y D K D T P D R W Q N V A K A V G S K S A E E V K R H Y D I
gm032707_Glyma1    M A S S S L S K Q K A S D S S W T P K Q N K L F E K A L A K Y D K D T P D R W Q N V A K A V G G K S A D E V K R H Y E I
gm008745_Glyma0    M G - - - - - - - - - - - - - W T R E E N R R F E D A L A V H G P N D P N R W Q H V A N A V G G K S V Q E V K M H Y E I
gm030637_Glyma1    M A S S S L S K Q K A S D S S W T P K Q N K L F E K A L A K Y D K D T P E R W Q N V A K A V G G K S A D E V K R H Y E I
gm001766_Glyma0    M A - - - - - - - - - - - S S W T P R Q N K L F E E A L A I H D R E T P D R W Q N V A R V V - G K S V E D V K R H Y E I
 
AT1G19510.1     L V E D L M N I E Q D L V P L P K Y K T - - V D V G S K S R G I D D F D - - - - - - - - - - - - - - - - - - - - - - L R
gm032707_Glyma1    L L E D L R H I E S G H V P L P K Y K - - - - S T G S S T - N V E E E E R K E K K R P L T K I I D T F F Q F L N V F T R
gm008745_Glyma0    L Q E D V I R I E R D Q I P L P S Y R G A A I N I N A R Q - N I D N E Q R - - - - - - - T T I I K - - - - - - - - - L N
gm030637_Glyma1    L L E D L R H I E S G R V P L P K Y K - - - - S T G S S T - N V D E E E - - - - - - - - - - - - - - - - - - - - - - - -
gm001766_Glyma0    L K E D I K R I E R G Q I P L P N Y - - - - - - T G S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT1G19510.1     L M K N M R I Q - - - - - - -
gm032707_Glyma1    H F Q N S T L N Y L V T Y S I
gm008745_Glyma0    L - - - - - - - - - - - - - -
gm030637_Glyma1    - - - - - - - - - - - - - - -
gm001766_Glyma0    - - - - - - - - - - - - - - -
 
0