fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G22810.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm002394 not found in 152aa AT1G71520.1 1st_not 0.414715719 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G22810.1     MDYRESTGESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCL
gm002394_Glyma0 --MRSSS--SAKKLKGVRRRKWGKWVSEIRVPGTQGRLWLGTYATQEAAAVAHDVAVYCL
                   *.*:  * .* **:*****************:.*****:::* *.********.:**

AT1G22810.1     HQPDSLESLNFPHLLNP-SLVSR-TSPRSIQQAASNAGMAIDAGIVHSTSVNS-------
gm002394_Glyma0 RRPSSLDKLNFPETLSSFSLQLRDMSPRSVQKVASDIGMDVDARNILAGGADEHSDVFRW
                ::*.**:.****. *.. **  *  ****:*:.**: ** :**  : : ..:.       

AT1G22810.1     ---GCGDTTTYYENGADQVE---PLNISVYDYLGGHDHV
gm002394_Glyma0 DAVGNEDGGSWHGSGGDCKERDQALSISIEDYLELS---
                   *  *  ::: .*.*  *   .*.**: ***
BoxShade v3.31 C (beta, 970507) Output
AT1G22810.1     M D Y R E S T G E S Q S K Y K G I R R R K W G K W V S E I R V P G T R D R L W L G S F S T A E G A A V A H D V A F F C L
gm002394_Glyma0    - - M R S S S - - S A K K L K G V R R R K W G K W V S E I R V P G T Q G R L W L G T Y A T Q E A A A V A H D V A V Y C L
 
AT1G22810.1     H Q P D S L E S L N F P H L L N P - S L V S R - T S P R S I Q Q A A S N A G M A I D A G I V H S T S V N S - - - - - - -
gm002394_Glyma0    R R P S S L D K L N F P E T L S S F S L Q L R D M S P R S V Q K V A S D I G M D V D A R N I L A G G A D E H S D V F R W
 
AT1G22810.1     - - - G C G D T T T Y Y E N G A D Q V E - - - P L N I S V Y D Y L G G H D H V
gm002394_Glyma0    D A V G N E D G G S W H G S G G D C K E R D Q A L S I S I E D Y L E L S - - -
 
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