fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G22810.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029484 not found in 179aa AT1G71520.1 not_not 0.404682274 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G22810.1     MDYREST----GESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVA
gm029484_Glyma1 MS-RSSAMHGITSTNNKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVA
                *. *.*:     .::.* **:*****************::*****:::*.*.********

AT1G22810.1     FFCLHQPDSLESLNFPHLLNPSLVS--RTSPRSIQQAASNAGMAIDA-GIV---------
gm029484_Glyma1 VYCLSRPSSLDKLNFPETLSSYSVQLRDMSPRSVQKVASDVGMDVDARNIVAGKTSTVGA
                .:** :*.**:.****. *..  *.    ****:*:.**:.** :** .**         

AT1G22810.1     -------HSTSVNSGCG-----------------DTTTYYENGADQVE--PLNISVYDYL
gm029484_Glyma1 ETNCESDERTSTASVCNVVGEGGADHSDVFWWDDDGGSWHGSGGDSTERDALSISIEDYL
                       . **. * *.                 *  ::: .*.*..*  .*.**: ***

AT1G22810.1     GGHDHV
gm029484_Glyma1 ------
BoxShade v3.31 C (beta, 970507) Output
AT1G22810.1     M D Y R E S T - - - - G E S Q S K Y K G I R R R K W G K W V S E I R V P G T R D R L W L G S F S T A E G A A V A H D V A
gm029484_Glyma1    M S - R S S A M H G I T S T N N K L K G V R R R K W G K W V S E I R V P G T Q E R L W L G T Y A T P E A A A V A H D V A
 
AT1G22810.1     F F C L H Q P D S L E S L N F P H L L N P S L V S - - R T S P R S I Q Q A A S N A G M A I D A - G I V - - - - - - - - -
gm029484_Glyma1    V Y C L S R P S S L D K L N F P E T L S S Y S V Q L R D M S P R S V Q K V A S D V G M D V D A R N I V A G K T S T V G A
 
AT1G22810.1     - - - - - - - H S T S V N S G C G - - - - - - - - - - - - - - - - - D T T T Y Y E N G A D Q V E - - P L N I S V Y D Y L
gm029484_Glyma1    E T N C E S D E R T S T A S V C N V V G E G G A D H S D V F W W D D D G G S W H G S G G D S T E R D A L S I S I E D Y L
 
AT1G22810.1     G G H D H V
gm029484_Glyma1    - - - - - -
 
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