fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G25560.1 VQTVVRLFGVNIFNV at 313/361 in AT1G25560.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035978 PVQMVRLFGVNIFNV in 357/401 AT1G25560.1 1st_1st 0.630792227 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G25560.1     ----------------------------------MEYSCVDDSSTTSESLSISTTPK---
pt035978_POPTR_ MPLSLVNKNTSSISLSFSFSLAPPSFTTTTRKKNMDGSCIDESTTSSADNSISITPTSLP
                                                  *: **:*:*:*:* . *** **.   

AT1G25560.1     ---PTTTTEKKLSSPPATSMRLYRMGSGGSSVVLDSENGVETESRKLPSSKYKGVVPQPN
pt035978_POPTR_ PFPPTATTTK---SPPES---LCRVRSGNSSVILDSESGVEAESRKLPSSKYKGVVPQPN
                   **:** *   *** :   * *: **.***:****.***:******************

AT1G25560.1     GRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRDAVTNFK--SQVDGNDAESAF
pt035978_POPTR_ GRWGAQIYEKHQRVWLGTFNEENEAARAYDIAAQRFRGRDAVTNFKQVNETEDDEIEAAF
                **********************:*** :****.:************  .:.:.:: *:**

AT1G25560.1     LDAHSKAEIVDMLRKHTYADEFEQSRR--KFVNGDGKRSGLETATYGNDA-------VLR
pt035978_POPTR_ LNAHSKAEIVDMLRKHTYSDELEQSKRNHRSNNGGNGKQYKNTANYENNSYDHGCGRVLK
                *:****************:**:***:*  :  **.. :.  :**.* *::       **:

AT1G25560.1     AREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTG
pt035978_POPTR_ AREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSTSS------NSTKGVLLNLEDVSG
                *** ****:************************* : ::      ..*****:**** :*

AT1G25560.1     KVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRS---
pt035978_POPTR_ KVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVCFQRSTGPDNQLYIDWKARCGSN
                *******************************:***:***:******.****.**.*.   

AT1G25560.1     --SPVQTVVRLFGVNIFNVSNEKPNDVAVECVGKKRSREDDLFSLG--CSKKQAIINIL
pt035978_POPTR_ QVQPVQ-MVRLFGVNIFNVPGMENG-----CDGKRSIRDMELLSIDRQYSKKQRIVGAL
                  .*** :***********.. : .     * **:  *: :*:*:.   **** *:. *
BoxShade v3.31 C (beta, 970507) Output
AT1G25560.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E Y S C V D D S S T T S E S L S I S T T P K - - -
pt035978_POPTR_    M P L S L V N K N T S S I S L S F S F S L A P P S F T T T T R K K N M D G S C I D E S T T S S A D N S I S I T P T S L P
 
AT1G25560.1     - - - P T T T T E K K L S S P P A T S M R L Y R M G S G G S S V V L D S E N G V E T E S R K L P S S K Y K G V V P Q P N
pt035978_POPTR_    P F P P T A T T T K - - - S P P E S - - - L C R V R S G N S S V I L D S E S G V E A E S R K L P S S K Y K G V V P Q P N
 
AT1G25560.1     G R W G A Q I Y E K H Q R V W L G T F N E E E E A A S S Y D I A V R R F R G R D A V T N F K - - S Q V D G N D A E S A F
pt035978_POPTR_    G R W G A Q I Y E K H Q R V W L G T F N E E N E A A R A Y D I A A Q R F R G R D A V T N F K Q V N E T E D D E I E A A F
 
AT1G25560.1     L D A H S K A E I V D M L R K H T Y A D E F E Q S R R - - K F V N G D G K R S G L E T A T Y G N D A - - - - - - - V L R
pt035978_POPTR_    L N A H S K A E I V D M L R K H T Y S D E L E Q S K R N H R S N N G G N G K Q Y K N T A N Y E N N S Y D H G C G R V L K
 
AT1G25560.1     A R E V L F E K T V T P S D V G K L N R L V I P K Q H A E K H F P L P A M T T A M G M N P S P T K G V L I N L E D R T G
pt035978_POPTR_    A R E Q L F E K A V T P S D V G K L N R L V I P K Q H A E K H F P L Q S T S S - - - - - - N S T K G V L L N L E D V S G
 
AT1G25560.1     K V W R F R Y S Y W N S S Q S Y V L T K G W S R F V K E K N L R A G D V V C F E R S T G P D R Q L Y I H W K V R S - - -
pt035978_POPTR_    K V W R F R Y S Y W N S S Q S Y V L T K G W S R F V K E K N L K A G D I V C F Q R S T G P D N Q L Y I D W K A R C G S N
 
AT1G25560.1     - - S P V Q T V V R L F G V N I F N V S N E K P N D V A V E C V G K K R S R E D D L F S L G - - C S K K Q A I I N I L
pt035978_POPTR_    Q V Q P V Q - M V R L F G V N I F N V P G M E N G - - - - - C D G K R S I R D M E L L S I D R Q Y S K K Q R I V G A L
 
0