fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G26945.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb002496 not found in 86aa AT3G28857.1 not_not 0.608695652 III
Gm010049 not found in 92aa AT1G74500.1 not_not 0.782608695 III
Gm015729 not found in 92aa AT1G74500.1 not_not 0.746376811 III
Pt019267 not found in 90aa AT5G39860.1 not_not 0.775362318 III
Pt023817 not found in 91aa AT1G74500.1 not_not 0.724637681 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G26945.1     MSSRRSSRSRQSGSSR-ISDDQISDLVSKLQHLIPE-LRRRRSDKVSASKVLQETCNYIR
gm015729_Glyma0 MSSRR-SRSRQTSSSRNITDDQINDLVSKLQQLLPE-IRDRRSDKVSASKVLQETCNYIR
pt019267_POPTR_ MSSRR---SRQSSVPR-ITDDQIIHLVSKLRQLLPE-IRQRRSDKVSASKVLQETCNYIK
Sb002496_Sorbi1 MSSGR--RGR-------ISDDEINELISKLQALLPESSRRRNASRSSASKLLKETCAYIK
pt023817_POPTR_ MSSRR-SRSRQSSSSR-ISDDQILDLVTKLQQLLPE-IRNRRSDKVSAAKILQETCNYIK
gm010049_Glyma0 MSSRR-SRSRQTSSSRNITDDQINDLVSKLQQLLPE-IRDRRSDKVSASKVLQETCNYIR
                *** *   .*       *:**:* .*::**: *:**  * *.:.: **:*:*:*** **:

AT1G26945.1     NLHREVDDLSDRLSELLASTDDNSAEAAIIRSLLNY
gm015729_Glyma0 SLHREVGDLSERLSELLDTTD--TAQAAIIRNLLMQ
pt019267_POPTR_ NLHREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
Sb002496_Sorbi1 SLHREVDDLSERLSGLMSTMDNDSPQAEIIRSLLR-
pt023817_POPTR_ SLHREVGDLSERLSELLETTD--TAQAAIIRNLLMQ
gm010049_Glyma0 SLHREVDDLSERLSELLATTD--TAQAAIIRNLLMQ
                .*****.***:*** *: : *  :.:* ***.*:
BoxShade v3.31 C (beta, 970507) Output
AT1G26945.1     M S S R R S S R S R Q S G S S R - I S D D Q I S D L V S K L Q H L I P E - L R R R R S D K V S A S K V L Q E T C N Y I R
gm015729_Glyma0    M S S R R - S R S R Q T S S S R N I T D D Q I N D L V S K L Q Q L L P E - I R D R R S D K V S A S K V L Q E T C N Y I R
pt019267_POPTR_    M S S R R - - - S R Q S S V P R - I T D D Q I I H L V S K L R Q L L P E - I R Q R R S D K V S A S K V L Q E T C N Y I K
Sb002496_Sorbi1    M S S G R - - R G R - - - - - - - I S D D E I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K
pt023817_POPTR_    M S S R R - S R S R Q S S S S R - I S D D Q I L D L V T K L Q Q L L P E - I R N R R S D K V S A A K I L Q E T C N Y I K
gm010049_Glyma0    M S S R R - S R S R Q T S S S R N I T D D Q I N D L V S K L Q Q L L P E - I R D R R S D K V S A S K V L Q E T C N Y I R
 
AT1G26945.1     N L H R E V D D L S D R L S E L L A S T D D N S A E A A I I R S L L N Y
gm015729_Glyma0    S L H R E V G D L S E R L S E L L D T T D - - T A Q A A I I R N L L M Q
pt019267_POPTR_    N L H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
Sb002496_Sorbi1    S L H R E V D D L S E R L S G L M S T M D N D S P Q A E I I R S L L R -
pt023817_POPTR_    S L H R E V G D L S E R L S E L L E T T D - - T A Q A A I I R N L L M Q
gm010049_Glyma0    S L H R E V D D L S E R L S E L L A T T D - - T A Q A A I I R N L L M Q
 
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