fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G26945.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004762 not found in 90aa AT5G39860.1 1st_not 0.789855072 II
Pt019267 not found in 90aa AT5G39860.1 not_not 0.775362318 III
Pt023817 not found in 91aa AT1G74500.1 not_not 0.724637681 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G26945.1     MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL
pt023817_POPTR_ MSSRR-SRSRQSSSSRISDDQILDLVTKLQQLLPEIRNRRSDKVSAAKILQETCNYIKSL
pt019267_POPTR_ MSSRR---SRQSSVPRITDDQIIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNL
pt004762_POPTR_ MSSRR---PRQSSVPRITDDQIIDLVSKLRQLLPEISQRRSDKVSASKVLQETCNYIRNL
                *****   .***. .**:**** .**:**::*:**: .********:*:********:.*

AT1G26945.1     HREVDDLSDRLSELLASTDDNSAEAAIIRSLLNY
pt023817_POPTR_ HREVGDLSERLSELLETTD--TAQAAIIRNLLMQ
pt019267_POPTR_ HREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
pt004762_POPTR_ HREVDDLSERLSQLLATIDADSPEAAIIRSLIM-
                ****.***:***:** : *  :.:* ***.*:
BoxShade v3.31 C (beta, 970507) Output
AT1G26945.1     M S S R R S S R S R Q S G S S R I S D D Q I S D L V S K L Q H L I P E L R R R R S D K V S A S K V L Q E T C N Y I R N L
pt023817_POPTR_    M S S R R - S R S R Q S S S S R I S D D Q I L D L V T K L Q Q L L P E I R N R R S D K V S A A K I L Q E T C N Y I K S L
pt019267_POPTR_    M S S R R - - - S R Q S S V P R I T D D Q I I H L V S K L R Q L L P E I R Q R R S D K V S A S K V L Q E T C N Y I K N L
pt004762_POPTR_    M S S R R - - - P R Q S S V P R I T D D Q I I D L V S K L R Q L L P E I S Q R R S D K V S A S K V L Q E T C N Y I R N L
 
AT1G26945.1     H R E V D D L S D R L S E L L A S T D D N S A E A A I I R S L L N Y
pt023817_POPTR_    H R E V G D L S E R L S E L L E T T D - - T A Q A A I I R N L L M Q
pt019267_POPTR_    H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
pt004762_POPTR_    H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I M -
 
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