fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G26945.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os011454 not found in 92aa AT1G26945.1 1st_1st 0.731884057 Ia
Os009859 not found in 88aa AT1G26945.1 not_1st 0.659420289 II
Os024206 not found in 87aa AT1G26945.1 not_1st 0.644927536 II
Os011458 not found in 91aa AT1G26945.1 not_1st 0.644927536 II
Os035852 not found in 88aa AT1G26945.1 not_1st 0.608695652 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G26945.1     MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIP-ELRRRRS-DKVSASKVLQETCNYIR
Os009859_Os02t0 MSSRR------SSRGSISEEEINELISKLQSLLP-NSRRRGS-SQASTTKLLKETCNYIK
Os035852_Os10t0 MSGRR-------ASGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIK
Os011458_Os03t0 MSSRRGG---GGGGGRITDEEINELISKLQALLPESSRSRGA-SRSSASKLLKETCSYIK
Os011454_Os03t0 MSSRR-SRSRQSGSSRITDEQISDLVSKLQDLLP-EARLRSN-DRVPSSRVLQETCNYIR
Os024206_Os06t0 MSSRR------SSRSSVSEEEINELISKLQSLLP-SSRRRGA-NQASTTKLLKETCSYIK
                **.**       . . :::::*.:*:**** *:* . * *   .: .::::*:* *.**:

AT1G26945.1     NLHREVDDLSDRLSELLASTDDNSAEAAIIRSLLNY
Os009859_Os02t0 SLHREVDDLSDRLSDLMATMDHNSPGAEIIRSILRS
Os035852_Os10t0 SLHREVDDLSERLSELMATMDSNSPQADIIRSLLR-
Os011458_Os03t0 SLHREVDDLSDRLSELMSTMDNNSPQAEIIRSLLR-
Os011454_Os03t0 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM-
Os024206_Os06t0 SLHREVDDLSDRLSDLMAGMDHNSPGAEIIRSLLR-
                .**:******:***:*::  * .*. * ****:*
BoxShade v3.31 C (beta, 970507) Output
AT1G26945.1     M S S R R S S R S R Q S G S S R I S D D Q I S D L V S K L Q H L I P - E L R R R R S - D K V S A S K V L Q E T C N Y I R
Os009859_Os02t0    M S S R R - - - - - - S S R G S I S E E E I N E L I S K L Q S L L P - N S R R R G S - S Q A S T T K L L K E T C N Y I K
Os035852_Os10t0    M S G R R - - - - - - - A S G R I T D D E I N E L I S K L Q S L L P E S S R R R G A T S R S P A T K L L K E M C S Y I K
Os011458_Os03t0    M S S R R G G - - - G G G G G R I T D E E I N E L I S K L Q A L L P E S S R S R G A - S R S S A S K L L K E T C S Y I K
Os011454_Os03t0    M S S R R - S R S R Q S G S S R I T D E Q I S D L V S K L Q D L L P - E A R L R S N - D R V P S S R V L Q E T C N Y I R
Os024206_Os06t0    M S S R R - - - - - - S S R S S V S E E E I N E L I S K L Q S L L P - S S R R R G A - N Q A S T T K L L K E T C S Y I K
 
AT1G26945.1     N L H R E V D D L S D R L S E L L A S T D D N S A E A A I I R S L L N Y
Os009859_Os02t0    S L H R E V D D L S D R L S D L M A T M D H N S P G A E I I R S I L R S
Os035852_Os10t0    S L H R E V D D L S E R L S E L M A T M D S N S P Q A D I I R S L L R -
Os011458_Os03t0    S L H R E V D D L S D R L S E L M S T M D N N S P Q A E I I R S L L R -
Os011454_Os03t0    S L H Q E V D D L S E R L S E L L A T S D M S S A Q A A I I R S L L M -
Os024206_Os06t0    S L H R E V D D L S D R L S D L M A G M D H N S P G A E I I R S L L R -
 
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