fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G26945.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb022206 not found in 213aa AT1G26945.1 1st_1st 0.695652173 Ia
Sb003265 not found in 86aa AT1G26945.1 not_1st 0.630434782 II
Sb002496 not found in 86aa AT3G28857.1 not_not 0.608695652 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G26945.1     ----------------------------------------MSSRRSSRSRQSGSSRISDD
Sb003265_Sorbi1 ----------------------------------------MSSRR-SR------ASVSEE
Sb022206_Sorbi1 LPFHHLCISNLLASLLTSQFVSRSLAKLLSPISQTTTSTKMSSRR-SRSRQSGSSRITEE
Sb002496_Sorbi1 ----------------------------------------MSSGR--R------GRISDD
                                                        *** *  *      . ::::

AT1G26945.1     QISDLVSKLQHLIP-ELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTD
Sb003265_Sorbi1 EINELISRLQTLLP-SARRRGGSEASTTKLLKETCSYIKSLHREVDDLSDRLSDLMATMD
Sb022206_Sorbi1 QISDLVSKLQDLLP-EARLQSNARVPSARVLQETCNYIRSLHQEVDDLSERLSELLATSD
Sb002496_Sorbi1 EINELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSLHREVDDLSERLSGLMSTMD
                :*.:*:*:** *:* . * :   . .::::*:*** **:.**:******:*** *::: *

AT1G26945.1     DNSAEAAIIRSLLNY
Sb003265_Sorbi1 HNSPGAEIIRSLLR-
Sb022206_Sorbi1 MSSAQAAVIRSLLM-
Sb002496_Sorbi1 NDSPQAEIIRSLLR-
                 .*. * :*****
BoxShade v3.31 C (beta, 970507) Output
AT1G26945.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S R R S S R S R Q S G S S R I S D D
Sb003265_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S R R - S R - - - - - - A S V S E E
Sb022206_Sorbi1    L P F H H L C I S N L L A S L L T S Q F V S R S L A K L L S P I S Q T T T S T K M S S R R - S R S R Q S G S S R I T E E
Sb002496_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S G R - - R - - - - - - G R I S D D
 
AT1G26945.1     Q I S D L V S K L Q H L I P - E L R R R R S D K V S A S K V L Q E T C N Y I R N L H R E V D D L S D R L S E L L A S T D
Sb003265_Sorbi1    E I N E L I S R L Q T L L P - S A R R R G G S E A S T T K L L K E T C S Y I K S L H R E V D D L S D R L S D L M A T M D
Sb022206_Sorbi1    Q I S D L V S K L Q D L L P - E A R L Q S N A R V P S A R V L Q E T C N Y I R S L H Q E V D D L S E R L S E L L A T S D
Sb002496_Sorbi1    E I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K S L H R E V D D L S E R L S G L M S T M D
 
AT1G26945.1     D N S A E A A I I R S L L N Y
Sb003265_Sorbi1    H N S P G A E I I R S L L R -
Sb022206_Sorbi1    M S S A Q A A V I R S L L M -
Sb002496_Sorbi1    N D S P Q A E I I R S L L R -
 
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