fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G26945.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm000625 not found in 93aa AT1G26945.1 not_1st 0.869565217 II
Gm022905 not found in 93aa AT1G26945.1 not_1st 0.862318840 II
Gm049258 not found in 93aa AT1G26945.1 not_1st 0.833333333 II
Gm051002 not found in 91aa AT1G26945.1 not_1st 0.804347826 II
Gm035037 not found in 91aa AT1G26945.1 not_1st 0.804347826 II
Gm025833 not found in 91aa AT1G26945.1 not_1st 0.782608695 II
Gm050375 not found in 92aa AT1G26945.1 not_1st 0.775362318 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G26945.1     MSSRRSSRSRQSG-SSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN
gm051002_Glyma1 MSSRR---SRQQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRS
gm035037_Glyma1 MSSRR---SRQQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRS
gm025833_Glyma0 MSSRR---SRQHSGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRS
gm022905_Glyma0 MSSRR-SRSRQSGVSTEITDAQITDLISKLQQLIPELRARRSDKVSASKVLQETCNYIKS
gm049258_Glyma1 MSSRR-SRSSQSDVSTEITDAQITDIISKLQQLIPELDARRSDKVSASKVLQETCNYIKS
gm000625_Glyma0 MSSRR-SRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSSAKVLQETCNYIKN
gm050375_Glyma1 MSSRR---SRQHSGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRG
                *****   * * . *:.*:* ** :::***::*:**:  *******::**********:.

AT1G26945.1     LHREVDDLSDRLSELLASTDDNSAEAAIIRSLLNY
gm051002_Glyma1 LHREVDDLSERLSQLLATIDADSPEAAIIRSLIN-
gm035037_Glyma1 LHREVDDLSERLSQLLATIDADSPEAAIIRSLIN-
gm025833_Glyma0 LHREVSDLSERLSQLLTTIDADSAEAGIIRSLLN-
gm022905_Glyma0 LHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM-
gm049258_Glyma1 LHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLL-
gm000625_Glyma0 LHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM-
gm050375_Glyma1 LHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ
                *****.***:***:**:. * :*.:*.*****:
BoxShade v3.31 C (beta, 970507) Output
AT1G26945.1     M S S R R S S R S R Q S G - S S R I S D D Q I S D L V S K L Q H L I P E L R R R R S D K V S A S K V L Q E T C N Y I R N
gm051002_Glyma1    M S S R R - - - S R Q Q S A S T R I S D D Q I I D L V S K L R Q L V P E I R D R R S D K V S A S K V L Q E T C N Y I R S
gm035037_Glyma1    M S S R R - - - S R Q Q S A S T R I S D D Q I I D L V S K L R Q L V P E I R D R R S D K V S A S K V L Q E T C N Y I R S
gm025833_Glyma0    M S S R R - - - S R Q H S G S T R I S D D Q I I E L V S K L R Q L V P E I R N R R S D K V S A S K V L Q E T C N Y I R S
gm022905_Glyma0    M S S R R - S R S R Q S G V S T E I T D A Q I T D L I S K L Q Q L I P E L R A R R S D K V S A S K V L Q E T C N Y I K S
gm049258_Glyma1    M S S R R - S R S S Q S D V S T E I T D A Q I T D I I S K L Q Q L I P E L D A R R S D K V S A S K V L Q E T C N Y I K S
gm000625_Glyma0    M S S R R - S R S R Q S G A S A E I T D A Q I T D L V S K L Q Q L I P E L R A R R S D K V S S A K V L Q E T C N Y I K N
gm050375_Glyma1    M S S R R - - - S R Q H S G S T R I S D D Q I I E L V S K L R Q L V P E I R N R R S D K V S A S K V L Q E T C N Y I R G
 
AT1G26945.1     L H R E V D D L S D R L S E L L A S T D D N S A E A A I I R S L L N Y
gm051002_Glyma1    L H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I N -
gm035037_Glyma1    L H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I N -
gm025833_Glyma0    L H R E V S D L S E R L S Q L L T T I D A D S A E A G I I R S L L N -
gm022905_Glyma0    L H R E V D D L S D R L S Q L L A T T D S N S A Q A A I I R S L L M -
gm049258_Glyma1    L H R E V D D L S D R L S Q L L A T T D S N S A Q A A I I R S L L L -
gm000625_Glyma0    L H R E V D D L S D R L S E L L A N T D S N S A Q A A I I R S L L M -
gm050375_Glyma1    L H R E V S D L S E R L S Q L L T T I D A D S A E A G I I R S L L N Q
 
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