fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G27730.1 SSHRGFDLNIPPIPEFS at 188/227 in AT1G27730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm014082 not found in 233aa AT1G27730.1 not_1st 0.489743589 II
Gm047952 not found in 240aa AT1G27730.1 not_1st 0.466666666 II
Gm039438 not found in 233aa AT1G27730.1 not_1st 0.458974358 II
Pt038538 not found in 252aa AT1G27730.1 not_1st 0.476923076 II
Pt029671 not found in 286aa AT1G27730.1 not_1st 0.466666666 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G27730.1     ----------------------------------------------MALEALTSPRLASP
pt038538_POPTR_ ----------------------------------------------MALEALNSPTTATP
pt029671_POPTR_ MADDDDRPPPLSLSLSIPFFLSLEILFVCSSRCPLTQENSVSRIQIMALEALNSPTTAAP
gm039438_Glyma1 ----------------------------------------------MALETLNSPTTTAP
gm014082_Glyma0 ----------------------------------------------MALEALQSPTTATP
gm047952_Glyma1 ----------------------------------------------MALEALNSPTTTAP
                                                              ****:* **  ::*

AT1G27730.1     IPPLFEDSSVFHGVEHWTKGKRSKR-SRSD--FHH-QNLTEEEYLAFCLMLLARDNRQ--
pt038538_POPTR_ SF-QFEESSTHCVVEPWAKRKRSKR-PR----LDHQPT--EEEYLALCLVMLARGSTN--
pt029671_POPTR_ F--NYEET--------WIKRKRSKR-PRSES-----PS-TEEEYLALCLIMLARGGSPA-
gm039438_Glyma1 SF-PFDDPTI-----PWAKRKRSKRCSR-----DH-PS--EEEYLALCLIMLARGGTT--
gm014082_Glyma0 SFSPFEETSLSYLETPWTKGKRSKR-SRTEQQLQH-PSCTEEEYLALCLIMLARGGAGSV
gm047952_Glyma1 SF-PFDDPTI-----PWAKRKRSKR-SR-----DH-PS--EEEYLALCLIMLARGGTTTV
                    :::.        * * ***** .*         .  ******:**::***..    

AT1G27730.1     -----PPPPP-----------------AVEKLSYKCSVCDKTFSSYQALGGHKASHRKNL
pt038538_POPTR_ -----LPIPALDGHHKKSLAPPTASTSSEQKISYKCSVCNKEFPSYQALGGHKASHRK--
pt029671_POPTR_ -----PPQPP------------------TLDLSYKCTVCNKAFSSYQALGGHKASHRKSS
gm039438_Glyma1 --RRVSTPP------------PQPTPDPSTKLSYKCSVCNKSFPSYQALGGHKASHRK--
gm014082_Glyma0 S----TAKPA--------VSDNNSAPLSAAKLSYKCSVCNKAFSSYQALGGHKASHRK--
gm047952_Glyma1 NNRHVSPPPP--------QPQPQPTPDPSTKLSYKCSVCDKSFPSYQALGGHKASHRK--
                      . *                     .:****:**:* *.**************  

AT1G27730.1     SQ-TLSG-GGDDHS---TSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEG
pt038538_POPTR_ ----LAG-GGEDQTTSCTTTSATTTPVSNGSGRVHECSICHRTFPTGQALGGHKRCHYEG
pt029671_POPTR_ SESTVAT-AAENPSTSTTTNTTTTTT----NGRTHECSICHKTFLTGQALGGHKRCHYEG
gm039438_Glyma1 ----LAASGGEDQPTTTSSAASSANTAS--GGRTHECSICHKSFPTGQALGGHKRCHYEG
gm014082_Glyma0 ----LAG---ENHP---TSSAVTTSSASNGGGRTHECSICHKTFSTGQALGGHKRCHYEG
gm047952_Glyma1 ----LAGAAEDQPPSTTTSSAAATSSAS--GGKAHECSICHKSFPTGQALGGHKRCHYEG
                    ::    :: .   :: : ::..    .*: * *:**:::* :**************

AT1G27730.1     ----NNNINTSSVS-NSEG--AGSTSHVS-SS---HR-----GFDLNIPPIPEFS----M
pt038538_POPTR_ IIGGA---EKSGVTSTSEG--AGSTNTRTHSHNHSHH-----DFDLNVPALPEFSS-DFF
pt029671_POPTR_ TIGGNNSSSASAAITTSDGGAVGGGGVIQSKS---QRSGGGFDFDLNLPALPEFEGPRIS
gm039438_Glyma1 NSNGNNNNSNSSVTAASEG--VGSTHTVSHGH---HR-----DFDLNIPAFPDFST-KVG
gm014082_Glyma0 --------GNSAVT-ASEG--VGSTHT---GS---HR-----DFDLNLPAFPDFSA-RFF
gm047952_Glyma1 NGNGNNNNSNSVVTVASEG--VGSTHTVSHGH---HR-----DFDLNIPAFPDFST-KVG
                          * .   *:*  .*.           ::     .****:*.:*:*.     

AT1G27730.1     VN---GDDEVMSPMPAKK-------PRFDFPVKLQL------
pt038538_POPTR_ VS---GDDEVMSPLPAAKRIRILMAPRIEVS-QAQ-------
pt029671_POPTR_ LQALCGDQEVESPLPGKK-------PRLMFSLKQEKTDMGSS
gm039438_Glyma1 ------EDEVESPHPVMKKPRPFVIPKIEIP-QYQ-------
gm014082_Glyma0 V-----DDEVTSPHPSKKSRFNLTIPKIEIP-QY--------
gm047952_Glyma1 ------EDEVESPHPVMKKPRLFVIPKIEIP-QFQ-------
                      ::** ** *  *       *:: .. :
BoxShade v3.31 C (beta, 970507) Output
AT1G27730.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L T S P R L A S P
pt038538_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T A T P
pt029671_POPTR_    M A D D D D R P P P L S L S L S I P F F L S L E I L F V C S S R C P L T Q E N S V S R I Q I M A L E A L N S P T T A A P
gm039438_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E T L N S P T T T A P
gm014082_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L Q S P T T A T P
gm047952_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T T A P
 
AT1G27730.1     I P P L F E D S S V F H G V E H W T K G K R S K R - S R S D - - F H H - Q N L T E E E Y L A F C L M L L A R D N R Q - -
pt038538_POPTR_    S F - Q F E E S S T H C V V E P W A K R K R S K R - P R - - - - L D H Q P T - - E E E Y L A L C L V M L A R G S T N - -
pt029671_POPTR_    F - - N Y E E T - - - - - - - - W I K R K R S K R - P R S E S - - - - - P S - T E E E Y L A L C L I M L A R G G S P A -
gm039438_Glyma1    S F - P F D D P T I - - - - - P W A K R K R S K R C S R - - - - - D H - P S - - E E E Y L A L C L I M L A R G G T T - -
gm014082_Glyma0    S F S P F E E T S L S Y L E T P W T K G K R S K R - S R T E Q Q L Q H - P S C T E E E Y L A L C L I M L A R G G A G S V
gm047952_Glyma1    S F - P F D D P T I - - - - - P W A K R K R S K R - S R - - - - - D H - P S - - E E E Y L A L C L I M L A R G G T T T V
 
AT1G27730.1     - - - - - P P P P P - - - - - - - - - - - - - - - - - A V E K L S Y K C S V C D K T F S S Y Q A L G G H K A S H R K N L
pt038538_POPTR_    - - - - - L P I P A L D G H H K K S L A P P T A S T S S E Q K I S Y K C S V C N K E F P S Y Q A L G G H K A S H R K - -
pt029671_POPTR_    - - - - - P P Q P P - - - - - - - - - - - - - - - - - - T L D L S Y K C T V C N K A F S S Y Q A L G G H K A S H R K S S
gm039438_Glyma1    - - R R V S T P P - - - - - - - - - - - - P Q P T P D P S T K L S Y K C S V C N K S F P S Y Q A L G G H K A S H R K - -
gm014082_Glyma0    S - - - - T A K P A - - - - - - - - V S D N N S A P L S A A K L S Y K C S V C N K A F S S Y Q A L G G H K A S H R K - -
gm047952_Glyma1    N N R H V S P P P P - - - - - - - - Q P Q P Q P T P D P S T K L S Y K C S V C D K S F P S Y Q A L G G H K A S H R K - -
 
AT1G27730.1     S Q - T L S G - G G D D H S - - - T S S A T T T S A V T T G S G K S H V C T I C N K S F P S G Q A L G G H K R C H Y E G
pt038538_POPTR_    - - - - L A G - G G E D Q T T S C T T T S A T T T P V S N G S G R V H E C S I C H R T F P T G Q A L G G H K R C H Y E G
pt029671_POPTR_    S E S T V A T - A A E N P S T S T T T N T T T T T T - - - - N G R T H E C S I C H K T F L T G Q A L G G H K R C H Y E G
gm039438_Glyma1    - - - - L A A S G G E D Q P T T T S S A A S S A N T A S - - G G R T H E C S I C H K S F P T G Q A L G G H K R C H Y E G
gm014082_Glyma0    - - - - L A G - - - E N H P - - - T S S A V T T S S A S N G G G R T H E C S I C H K T F S T G Q A L G G H K R C H Y E G
gm047952_Glyma1    - - - - L A G A A E D Q P P S T T T S S A A A T S S A S - - G G K A H E C S I C H K S F P T G Q A L G G H K R C H Y E G
 
AT1G27730.1     - - - - N N N I N T S S V S - N S E G - - A G S T S H V S - S S - - - H R - - - - - G F D L N I P P I P E F S - - - - M
pt038538_POPTR_    I I G G A - - - E K S G V T S T S E G - - A G S T N T R T H S H N H S H H - - - - - D F D L N V P A L P E F S S - D F F
pt029671_POPTR_    T I G G N N S S S A S A A I T T S D G G A V G G G G V I Q S K S - - - Q R S G G G F D F D L N L P A L P E F E G P R I S
gm039438_Glyma1    N S N G N N N N S N S S V T A A S E G - - V G S T H T V S H G H - - - H R - - - - - D F D L N I P A F P D F S T - K V G
gm014082_Glyma0    - - - - - - - - G N S A V T - A S E G - - V G S T H T - - - G S - - - H R - - - - - D F D L N L P A F P D F S A - R F F
gm047952_Glyma1    N G N G N N N N S N S V V T V A S E G - - V G S T H T V S H G H - - - H R - - - - - D F D L N I P A F P D F S T - K V G
 
AT1G27730.1     V N - - - G D D E V M S P M P A K K - - - - - - - P R F D F P V K L Q L - - - - - -
pt038538_POPTR_    V S - - - G D D E V M S P L P A A K R I R I L M A P R I E V S - Q A Q - - - - - - -
pt029671_POPTR_    L Q A L C G D Q E V E S P L P G K K - - - - - - - P R L M F S L K Q E K T D M G S S
gm039438_Glyma1    - - - - - - E D E V E S P H P V M K K P R P F V I P K I E I P - Q Y Q - - - - - - -
gm014082_Glyma0    V - - - - - D D E V T S P H P S K K S R F N L T I P K I E I P - Q Y - - - - - - - -
gm047952_Glyma1    - - - - - - E D E V E S P H P V M K K P R L F V I P K I E I P - Q F Q - - - - - - -
 
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