fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G27730.1 SSHRGFDLNIPPIPEFS at 188/227 in AT1G27730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt020831 SGKKPRLTLSLQKEKT in 235/250 AT3G19580.2 not_not 0.415384615 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G27730.1     MALEALTSPRLASPIPPLFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFCLM
pt020831_POPTR_ MALEALNSPTTATPFN--YEDTCV--------KRKRSKRSRSE---SPSTEEEYLALCLI
                ******.**  *:*:   :**:.*        * ********:   .  *******:**:

AT1G27730.1     LLARD---------NRQ-----PPPPPAVEKLSYKCSVCDKTFSSYQALGGHKASHRKNL
pt020831_POPTR_ MLARGGSTTSTTTANKETAPPAPPQPPTL-NLSYKCTVCNKAFPSYQALGGHKASHRKSS
                :***.         *::     ** **:: :*****:**:*:*.**************. 

AT1G27730.1     SQTLSGGGDDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYE----GN
pt020831_POPTR_ SESTTAA---ENPSTSTTPATTTNTSGRTHECSICHKTFPTGQALGGHKRCHYEGTIGGN
                *:: :..   ...*::**.::.*. **::* *:**:*:**:*************    **

AT1G27730.1     NNINTSSV-----SNSEGAGSTSHVSSSHRG----FDLNIPPIPEF-------SMVNGDD
pt020831_POPTR_ NNSSTSAAITTSDSGAVGGGGVSQSQSQRSGGGFDFDLNLPALPEFEGPRIGHQALLRDQ
                ** .**:.     *.: *.*..*: .*.: *    ****:*.:***       . :  *:

AT1G27730.1     EVMSPMPAKKPRFDFPVKLQL------
pt020831_POPTR_ EVESPLSGKKPRLTLSLQKEKTGVVSL
                ** **:..****: :.:: :
BoxShade v3.31 C (beta, 970507) Output
AT1G27730.1     M A L E A L T S P R L A S P I P P L F E D S S V F H G V E H W T K G K R S K R S R S D F H H Q N L T E E E Y L A F C L M
pt020831_POPTR_    M A L E A L N S P T T A T P F N - - Y E D T C V - - - - - - - - K R K R S K R S R S E - - - S P S T E E E Y L A L C L I
 
AT1G27730.1     L L A R D - - - - - - - - - N R Q - - - - - P P P P P A V E K L S Y K C S V C D K T F S S Y Q A L G G H K A S H R K N L
pt020831_POPTR_    M L A R G G S T T S T T T A N K E T A P P A P P Q P P T L - N L S Y K C T V C N K A F P S Y Q A L G G H K A S H R K S S
 
AT1G27730.1     S Q T L S G G G D D H S T S S A T T T S A V T T G S G K S H V C T I C N K S F P S G Q A L G G H K R C H Y E - - - - G N
pt020831_POPTR_    S E S T T A A - - - E N P S T S T T P A T T T N T S G R T H E C S I C H K T F P T G Q A L G G H K R C H Y E G T I G G N
 
AT1G27730.1     N N I N T S S V - - - - - S N S E G A G S T S H V S S S H R G - - - - F D L N I P P I P E F - - - - - - - S M V N G D D
pt020831_POPTR_    N N S S T S A A I T T S D S G A V G G G G V S Q S Q S Q R S G G G F D F D L N L P A L P E F E G P R I G H Q A L L R D Q
 
AT1G27730.1     E V M S P M P A K K P R F D F P V K L Q L - - - - - -
pt020831_POPTR_    E V E S P L S G K K P R L T L S L Q K E K T G V V S L
 
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