fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G27730.1 SSHRGFDLNIPPIPEFS at 188/227 in AT1G27730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb031816 not found in 430aa AT1G27730.1 1st_1st 0.338461538 Ib
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G27730.1     --------------------------MALEAL---TSPRLASPIPPLF------------
Sb031816_Sorbi1 SSSCQQEASTNRSAIDRSSWLFDRLIMAVEAVLDAAAAVMPSPAPPRGRGDDVVVVVGGA
                                          **:**:   ::. :.** **              

AT1G27730.1     ----------------------ED-SSVFHGVEHWTKG--KRSKRS--RSDFHHQN----
Sb031816_Sorbi1 AAAADDQVATTSGGGGTAAEEEEDVNAVVQQEEHGHQGLAKRKKRSRRRRDREQQQPPTP
                                      ** .:*.:  **  :*  **.***  * * .:*:    

AT1G27730.1     -LTEEEYLAFCLMLLA---RDNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGHKASHRK
Sb031816_Sorbi1 TQTQEEYLAQCLVMLATGRRDRDVPAPAPPQD---HACSVCGKVFPTYQALGGHKASHRT
                  *:***** **::**   **.  *.*.*. :   : ****.*.*.:************.

AT1G27730.1     NLSQTLS----GGGDDH------------STSSATTTSAVTTGSGKSHVCTICNKSFPSG
Sb031816_Sorbi1 KPSPAPTTPGVGDGDHHHDEEEKKPPVLPSSSSAGSADTKPAAPAATHECNVCGKAFPTG
                : * : :    *.**.*            *:*** ::.: .:... :* *.:*.*:**:*

AT1G27730.1     QALGGHKRCHYEGNNNINTSSVSNSEGAGSTSHVSSSHR-------GFDLNIPPIPEFSM
Sb031816_Sorbi1 QALGGHKRRHYDG----TIGSAAAPARASSSSAATSSRNTAPPPAVAFDLNLPALPERCA
                ******** **:*    . .*.: .  *.*:* .:**:.       .****:*.:** . 

AT1G27730.1     VNGDDEVMSPMPAKKPRFD-FPVKLQL
Sb031816_Sorbi1 VAEDDEVLSPLAFKKPRFMIIPA----
                *  ****:**:. *****  :*.
BoxShade v3.31 C (beta, 970507) Output
AT1G27730.1     - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L - - - T S P R L A S P I P P L F - - - - - - - - - - - -
Sb031816_Sorbi1    S S S C Q Q E A S T N R S A I D R S S W L F D R L I M A V E A V L D A A A A V M P S P A P P R G R G D D V V V V V G G A
 
AT1G27730.1     - - - - - - - - - - - - - - - - - - - - - - E D - S S V F H G V E H W T K G - - K R S K R S - - R S D F H H Q N - - - -
Sb031816_Sorbi1    A A A A D D Q V A T T S G G G G T A A E E E E D V N A V V Q Q E E H G H Q G L A K R K K R S R R R R D R E Q Q Q P P T P
 
AT1G27730.1     - L T E E E Y L A F C L M L L A - - - R D N R Q P P P P P A V E K L S Y K C S V C D K T F S S Y Q A L G G H K A S H R K
Sb031816_Sorbi1    T Q T Q E E Y L A Q C L V M L A T G R R D R D V P A P A P P Q D - - - H A C S V C G K V F P T Y Q A L G G H K A S H R T
 
AT1G27730.1     N L S Q T L S - - - - G G G D D H - - - - - - - - - - - - S T S S A T T T S A V T T G S G K S H V C T I C N K S F P S G
Sb031816_Sorbi1    K P S P A P T T P G V G D G D H H H D E E E K K P P V L P S S S S A G S A D T K P A A P A A T H E C N V C G K A F P T G
 
AT1G27730.1     Q A L G G H K R C H Y E G N N N I N T S S V S N S E G A G S T S H V S S S H R - - - - - - - G F D L N I P P I P E F S M
Sb031816_Sorbi1    Q A L G G H K R R H Y D G - - - - T I G S A A A P A R A S S S S A A T S S R N T A P P P A V A F D L N L P A L P E R C A
 
AT1G27730.1     V N G D D E V M S P M P A K K P R F D - F P V K L Q L
Sb031816_Sorbi1    V A E D D E V L S P L A F K K P R F M I I P A - - - -
 
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