fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G27730.1 SSHRGFDLNIPPIPEFS at 188/227 in AT1G27730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt038538 not found in 252aa AT1G27730.1 not_1st 0.476923076 II
Pt029671 not found in 286aa AT1G27730.1 not_1st 0.466666666 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G27730.1     ----------------------------------------------MALEALTSPRLASP
pt029671_POPTR_ MADDDDRPPPLSLSLSIPFFLSLEILFVCSSRCPLTQENSVSRIQIMALEALNSPTTAAP
pt038538_POPTR_ ----------------------------------------------MALEALNSPTTATP
                                                              ******.**  *:*

AT1G27730.1     IPPLFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFCLMLLARDNRQPP----
pt029671_POPTR_ --FNYEET--------WIKRKRSKRPRSE---SPSTEEEYLALCLIMLARGGSPAP-PQ-
pt038538_POPTR_ -SFQFEESSTHCVVEPWAKRKRSKRPRLD--HQP-TEEEYLALCLVMLARGSTNLPIPAL
                    :*::        * * *****.* :   .  *******:**::***..   *    

AT1G27730.1     ---------PPPAV----EKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQ-TLSGGGDD
pt029671_POPTR_ ---------PPTLD------LSYKCTVCNKAFSSYQALGGHKASHRKSSSESTVATAAEN
pt038538_POPTR_ DGHHKKSLAPPTASTSSEQKISYKCSVCNKEFPSYQALGGHKASHRK------LAGGGED
                         **.        :****:**:* *.**************      :: ..::

AT1G27730.1     HSTSSATTTSAVTT----GSGKSHVCTICNKSFPSGQALGGHKRCHYEG--NNNINTS--
pt029671_POPTR_ PSTSTTTNTTTTTT-----NGRTHECSICHKTFLTGQALGGHKRCHYEGTIGGNNSSSAS
pt038538_POPTR_ Q-TTSCTTTSATTTPVSNGSGRVHECSICHRTFPTGQALGGHKRCHYEGIIGGAEKSG--
                  *:: *.*::.**     .*: * *:**:::* :**************  ..  .:.  

AT1G27730.1     -SVSNSEG---AGST-----SHVSSSHRGFDLNIPPIPEFS-------MVNGDDEVMSPM
pt029671_POPTR_ AAITTSDGGAVGGGGVIQSKSQRSGGGFDFDLNLPALPEFEGPRISLQALCGDQEVESPL
pt038538_POPTR_ -VTSTSEG---AGSTNTRTHSH-NHSHHDFDLNVPALPEFSSD----FFVSGDDEVMSPL
                   :.*:*   .*.      *: . .  .****:*.:***.        : **:** **:

AT1G27730.1     PAKK-------PRFDFPVKLQL------
pt029671_POPTR_ PGKK-------PRLMFSLKQEKTDMGSS
pt038538_POPTR_ PAAKRIRILMAPRIEVS-QAQ-------
                *. *       **: .. : :
BoxShade v3.31 C (beta, 970507) Output
AT1G27730.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L T S P R L A S P
pt029671_POPTR_    M A D D D D R P P P L S L S L S I P F F L S L E I L F V C S S R C P L T Q E N S V S R I Q I M A L E A L N S P T T A A P
pt038538_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T A T P
 
AT1G27730.1     I P P L F E D S S V F H G V E H W T K G K R S K R S R S D F H H Q N L T E E E Y L A F C L M L L A R D N R Q P P - - - -
pt029671_POPTR_    - - F N Y E E T - - - - - - - - W I K R K R S K R P R S E - - - S P S T E E E Y L A L C L I M L A R G G S P A P - P Q -
pt038538_POPTR_    - S F Q F E E S S T H C V V E P W A K R K R S K R P R L D - - H Q P - T E E E Y L A L C L V M L A R G S T N L P I P A L
 
AT1G27730.1     - - - - - - - - - P P P A V - - - - E K L S Y K C S V C D K T F S S Y Q A L G G H K A S H R K N L S Q - T L S G G G D D
pt029671_POPTR_    - - - - - - - - - P P T L D - - - - - - L S Y K C T V C N K A F S S Y Q A L G G H K A S H R K S S S E S T V A T A A E N
pt038538_POPTR_    D G H H K K S L A P P T A S T S S E Q K I S Y K C S V C N K E F P S Y Q A L G G H K A S H R K - - - - - - L A G G G E D
 
AT1G27730.1     H S T S S A T T T S A V T T - - - - G S G K S H V C T I C N K S F P S G Q A L G G H K R C H Y E G - - N N N I N T S - -
pt029671_POPTR_    P S T S T T T N T T T T T T - - - - - N G R T H E C S I C H K T F L T G Q A L G G H K R C H Y E G T I G G N N S S S A S
pt038538_POPTR_    Q - T T S C T T T S A T T T P V S N G S G R V H E C S I C H R T F P T G Q A L G G H K R C H Y E G I I G G A E K S G - -
 
AT1G27730.1     - S V S N S E G - - - A G S T - - - - - S H V S S S H R G F D L N I P P I P E F S - - - - - - - M V N G D D E V M S P M
pt029671_POPTR_    A A I T T S D G G A V G G G G V I Q S K S Q R S G G G F D F D L N L P A L P E F E G P R I S L Q A L C G D Q E V E S P L
pt038538_POPTR_    - V T S T S E G - - - A G S T N T R T H S H - N H S H H D F D L N V P A L P E F S S D - - - - F F V S G D D E V M S P L
 
AT1G27730.1     P A K K - - - - - - - P R F D F P V K L Q L - - - - - -
pt029671_POPTR_    P G K K - - - - - - - P R L M F S L K Q E K T D M G S S
pt038538_POPTR_    P A A K R I R I L M A P R I E V S - Q A Q - - - - - - -
 
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