fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G27730.1 SSHRGFDLNIPPIPEFS at 188/227 in AT1G27730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt017464 not found in 238aa AT1G27730.1 1st_1st 0.492307692 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G27730.1     MALEALTSPRLASPIPP--LFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFC
pt017464_POPTR_ MALEALNSPTTA---PPSFQFEDLSLPCAGEPWVKRKRSKRPRLD--HQP-TEEEYLALC
                ******.**  *   **   *** *:  . * *.* *****.* *  **  *******:*

AT1G27730.1     LMLLARDNRQPPPPPAV-----EKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQTLSGG
pt017464_POPTR_ LVMLARGHQKSLTPSTVFTSSELKNSYKCSVCNKEFPSYQALGGHKASHRK-----LAGG
                *::***.:::. .*.:*      * *******:* *.**************     *:**

AT1G27730.1     GDDHSTSSATT-----TSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEG--NNNIN
pt017464_POPTR_ GEDQTTSSTTTSAITATKTVSNGSGKTHECSICHKTFPTGQALGGHKRCHYEGIIGGGEK
                *:*::***:**     *.:*:.****:* *:**:*:**:**************  ... :

AT1G27730.1     TSSVSNSEGAGSTSHVSSSHRGFDLNIPPIPEFS---MVNGDDEVMSPMP-AKKPRFDFP
pt017464_POPTR_ SGVTSTSESAGSTNTRTHSHNEFDLNIPALPEFSSCFSVSGEDEVMSPLPAAKKLRISMP
                :. .*.**.****.  : **. ******.:****    *.*:******:* *** *:.:*

AT1G27730.1     VKLQL----
pt017464_POPTR_ PRFEVSQAQ
                 ::::
BoxShade v3.31 C (beta, 970507) Output
AT1G27730.1     M A L E A L T S P R L A S P I P P - - L F E D S S V F H G V E H W T K G K R S K R S R S D F H H Q N L T E E E Y L A F C
pt017464_POPTR_    M A L E A L N S P T T A - - - P P S F Q F E D L S L P C A G E P W V K R K R S K R P R L D - - H Q P - T E E E Y L A L C
 
AT1G27730.1     L M L L A R D N R Q P P P P P A V - - - - - E K L S Y K C S V C D K T F S S Y Q A L G G H K A S H R K N L S Q T L S G G
pt017464_POPTR_    L V M L A R G H Q K S L T P S T V F T S S E L K N S Y K C S V C N K E F P S Y Q A L G G H K A S H R K - - - - - L A G G
 
AT1G27730.1     G D D H S T S S A T T - - - - - T S A V T T G S G K S H V C T I C N K S F P S G Q A L G G H K R C H Y E G - - N N N I N
pt017464_POPTR_    G E D Q T T S S T T T S A I T A T K T V S N G S G K T H E C S I C H K T F P T G Q A L G G H K R C H Y E G I I G G G E K
 
AT1G27730.1     T S S V S N S E G A G S T S H V S S S H R G F D L N I P P I P E F S - - - M V N G D D E V M S P M P - A K K P R F D F P
pt017464_POPTR_    S G V T S T S E S A G S T N T R T H S H N E F D L N I P A L P E F S S C F S V S G E D E V M S P L P A A K K L R I S M P
 
AT1G27730.1     V K L Q L - - - -
pt017464_POPTR_    P R F E V S Q A Q
 
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