fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G27730.1 SSHRGFDLNIPPIPEFS at 188/227 in AT1G27730.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt017464 not found in 238aa AT1G27730.1 1st_1st 0.492307692 Ia
Pt038538 not found in 252aa AT1G27730.1 not_1st 0.476923076 II
Pt029671 not found in 286aa AT1G27730.1 not_1st 0.466666666 II
Pt020831 SGKKPRLTLSLQKEKT in 235/250 AT3G19580.2 not_not 0.415384615 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G27730.1     ----------------------------------------------MALEALTSPRLASP
pt020831_POPTR_ ----------------------------------------------MALEALNSPTTATP
pt038538_POPTR_ ----------------------------------------------MALEALNSPTTATP
pt017464_POPTR_ ----------------------------------------------MALEALNSPTTAPP
pt029671_POPTR_ MADDDDRPPPLSLSLSIPFFLSLEILFVCSSRCPLTQENSVSRIQIMALEALNSPTTAAP
                                                              ******.**  *.*

AT1G27730.1     IPPLFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFCLMLLARD---------
pt020831_POPTR_ --FNYEDT--------CVKRKRSKRSRSE---SPSTEEEYLALCLIMLARGGSTTSTTTA
pt038538_POPTR_ -SFQFEESSTHCVVEPWAKRKRSKRPRLD--HQP-TEEEYLALCLVMLARGSTNLPIPAL
pt017464_POPTR_ -SFQFEDLSLPCAGEPWVKRKRSKRPRLD--HQP-TEEEYLALCLVMLARG---------
pt029671_POPTR_ --FNYEET--------WIKRKRSKRPRSE---SPSTEEEYLALCLIMLARGGS-------
                    :*:           * *****.* :   .  *******:**::***.         

AT1G27730.1     ---NRQPPPPPAV-----EKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQ-TLSGGGDD
pt020831_POPTR_ NK-ETAPPAPPQPPT---LNLSYKCTVCNKAFPSYQALGGHKASHRKSSSEST--TAAEN
pt038538_POPTR_ DGHHKKSLAPPTASTSSEQKISYKCSVCNKEFPSYQALGGHKASHRK------LAGGGED
pt017464_POPTR_ ---HQKSLTPSTVFTSSELKNSYKCSVCNKEFPSYQALGGHKASHRK------LAGGGED
pt029671_POPTR_ -------PAPPQPPT---LDLSYKCTVCNKAFSSYQALGGHKASHRKSSSESTVATAAEN
                        .*.        . ****:**:* *.**************         ..::

AT1G27730.1     HSTSSAT-----TTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEG--NNNINTSS
pt020831_POPTR_ PSTSTTP-------ATTTNTSGRTHECSICHKTFPTGQALGGHKRCHYEGTIGGNNNSST
pt038538_POPTR_ QTTSCTTTSA--TTTPVSNGSGRVHECSICHRTFPTGQALGGHKRCHYEGIIGGAEKSGV
pt017464_POPTR_ QTTSSTTTSAITATKTVSNGSGKTHECSICHKTFPTGQALGGHKRCHYEGIIGGGEKSGV
pt029671_POPTR_ PSTSTTT------NTTTTTTNGRTHECSICHKTFLTGQALGGHKRCHYEGTIGGNNSSSA
                 :** :.        ..:. .*: * *:**:::* :**************  ..  .:. 

AT1G27730.1     ---VSNSEG---AGSTSHVSSSHR-----GFDLNIPPIPEFS-------MVNGDDEVMSP
pt020831_POPTR_ SAAITTSDSGAVGGGGVSQSQSQRSGGGFDFDLNLPALPEFEGPRIGHQALLRDQEVESP
pt038538_POPTR_ ---TSTSEG---AGSTNTRTHSHNH-SHHDFDLNVPALPEFSSD----FFVSGDDEVMSP
pt017464_POPTR_ ---TSTSES---AGSTNTRTHSHN-----EFDLNIPALPEFSSC----FSVSGEDEVMSP
pt029671_POPTR_ SAAITTSDGGAVGGGGVIQSKSQRSGGGFDFDLNLPALPEFEGPRISLQALCGDQEVESP
                    :.*:.   .*.    : *:.      ****:*.:***.        :  ::** **

AT1G27730.1     MP-AKKPRFDFPVKLQL------
pt020831_POPTR_ LS-GKKPRLTLSLQKEKTGVVSL
pt038538_POPTR_ LPAAKRIRILMAPRIEVSQAQ--
pt017464_POPTR_ LPAAKKLRISMPPRFEVSQAQ--
pt029671_POPTR_ LP-GKKPRLMFSLKQEKTDMGSS
                :. .*: *: :. : :
BoxShade v3.31 C (beta, 970507) Output
AT1G27730.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L T S P R L A S P
pt020831_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T A T P
pt038538_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T A T P
pt017464_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A L E A L N S P T T A P P
pt029671_POPTR_    M A D D D D R P P P L S L S L S I P F F L S L E I L F V C S S R C P L T Q E N S V S R I Q I M A L E A L N S P T T A A P
 
AT1G27730.1     I P P L F E D S S V F H G V E H W T K G K R S K R S R S D F H H Q N L T E E E Y L A F C L M L L A R D - - - - - - - - -
pt020831_POPTR_    - - F N Y E D T - - - - - - - - C V K R K R S K R S R S E - - - S P S T E E E Y L A L C L I M L A R G G S T T S T T T A
pt038538_POPTR_    - S F Q F E E S S T H C V V E P W A K R K R S K R P R L D - - H Q P - T E E E Y L A L C L V M L A R G S T N L P I P A L
pt017464_POPTR_    - S F Q F E D L S L P C A G E P W V K R K R S K R P R L D - - H Q P - T E E E Y L A L C L V M L A R G - - - - - - - - -
pt029671_POPTR_    - - F N Y E E T - - - - - - - - W I K R K R S K R P R S E - - - S P S T E E E Y L A L C L I M L A R G G S - - - - - - -
 
AT1G27730.1     - - - N R Q P P P P P A V - - - - - E K L S Y K C S V C D K T F S S Y Q A L G G H K A S H R K N L S Q - T L S G G G D D
pt020831_POPTR_    N K - E T A P P A P P Q P P T - - - L N L S Y K C T V C N K A F P S Y Q A L G G H K A S H R K S S S E S T - - T A A E N
pt038538_POPTR_    D G H H K K S L A P P T A S T S S E Q K I S Y K C S V C N K E F P S Y Q A L G G H K A S H R K - - - - - - L A G G G E D
pt017464_POPTR_    - - - H Q K S L T P S T V F T S S E L K N S Y K C S V C N K E F P S Y Q A L G G H K A S H R K - - - - - - L A G G G E D
pt029671_POPTR_    - - - - - - - P A P P Q P P T - - - L D L S Y K C T V C N K A F S S Y Q A L G G H K A S H R K S S S E S T V A T A A E N
 
AT1G27730.1     H S T S S A T - - - - - T T S A V T T G S G K S H V C T I C N K S F P S G Q A L G G H K R C H Y E G - - N N N I N T S S
pt020831_POPTR_    P S T S T T P - - - - - - - A T T T N T S G R T H E C S I C H K T F P T G Q A L G G H K R C H Y E G T I G G N N N S S T
pt038538_POPTR_    Q T T S C T T T S A - - T T T P V S N G S G R V H E C S I C H R T F P T G Q A L G G H K R C H Y E G I I G G A E K S G V
pt017464_POPTR_    Q T T S S T T T S A I T A T K T V S N G S G K T H E C S I C H K T F P T G Q A L G G H K R C H Y E G I I G G G E K S G V
pt029671_POPTR_    P S T S T T T - - - - - - N T T T T T T N G R T H E C S I C H K T F L T G Q A L G G H K R C H Y E G T I G G N N S S S A
 
AT1G27730.1     - - - V S N S E G - - - A G S T S H V S S S H R - - - - - G F D L N I P P I P E F S - - - - - - - M V N G D D E V M S P
pt020831_POPTR_    S A A I T T S D S G A V G G G G V S Q S Q S Q R S G G G F D F D L N L P A L P E F E G P R I G H Q A L L R D Q E V E S P
pt038538_POPTR_    - - - T S T S E G - - - A G S T N T R T H S H N H - S H H D F D L N V P A L P E F S S D - - - - F F V S G D D E V M S P
pt017464_POPTR_    - - - T S T S E S - - - A G S T N T R T H S H N - - - - - E F D L N I P A L P E F S S C - - - - F S V S G E D E V M S P
pt029671_POPTR_    S A A I T T S D G G A V G G G G V I Q S K S Q R S G G G F D F D L N L P A L P E F E G P R I S L Q A L C G D Q E V E S P
 
AT1G27730.1     M P - A K K P R F D F P V K L Q L - - - - - -
pt020831_POPTR_    L S - G K K P R L T L S L Q K E K T G V V S L
pt038538_POPTR_    L P A A K R I R I L M A P R I E V S Q A Q - -
pt017464_POPTR_    L P A A K K L R I S M P P R F E V S Q A Q - -
pt029671_POPTR_    L P - G K K P R L M F S L K Q E K T D M G S S
 
0