fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt011200 not found in 295aa AT1G28160.1 1st_1st 0.340314136 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28160.1     MEFNGNLNAGSC-SRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTT
pt011200_POPTR_ MDFTQSTKTNSTPSPSKNKRKQQQQQQKNQNQQEQHEVRFLGVRRRPWGRYAAEIRDPST
                *:*. . ::.*  * **:.::*:*** : * **. .*::::***************:*:*

AT1G28160.1     KERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRFIS
pt011200_POPTR_ KERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPPASSVTSIISPDESQHDIS
                ***:*********************:** .*********** .*****::******: **

AT1G28160.1     ELFNPPSQLEATNSNNNNNNNLYSSTN----------NQNQNSIEFSYNGWPQEAECGYQ
pt011200_POPTR_ ALFAPPPQNHA-HQNDTNCQKLFFSQDQYPFNAYAYGNSNSNLLT-GGEGWVQ--GCGAG
                 ** **.* .* :.*:.* ::*: * :          *.*.* :  . :** *   **  

AT1G28160.1     SIT-----------------------SNAEHCDHELPPLPP---STCFGAELRIPETDSY
pt011200_POPTR_ AADGPGGSYEPNNAGSFGVATEPIYFSNKDNI--ELPPLPPDVNSSCYGSDM----DHGF
                :                         ** ::   *******   *:*:*:::     ..:

AT1G28160.1     WNVAHASIDTFAFELD---------------GFVDQNSLGQSGTEGFNSLP---------
pt011200_POPTR_ WNDA----GFFGFQEEQKNNGNGLEISGSSLGF-DSNDFGQHGSL-FEIMPSVSDTVTDE
                ** *    . *.*: :               ** *.*.:** *:  *: :*         

AT1G28160.1     ------STFFYQ
pt011200_POPTR_ LDLGSSSTLYF-
                      **:::
BoxShade v3.31 C (beta, 970507) Output
AT1G28160.1     M E F N G N L N A G S C - S R S K K S H R Q K Q Q Q P Q P Q P Q Q H I E E I K Y V G V R R R P W G R Y A A E I R N P T T
pt011200_POPTR_    M D F T Q S T K T N S T P S P S K N K R K Q Q Q Q Q Q K N Q N Q Q E Q H E V R F L G V R R R P W G R Y A A E I R D P S T
 
AT1G28160.1     K E R Y W L G T F D T A E E A A L A Y D R A A R S I R G L T A R T N F V Y S D M P R G S S V T S F V S P D E S Q R F I S
pt011200_POPTR_    K E R H W L G T F D T A E E A A L A Y D R A A R S M R G S K A R T N F V Y S D M P P A S S V T S I I S P D E S Q H D I S
 
AT1G28160.1     E L F N P P S Q L E A T N S N N N N N N N L Y S S T N - - - - - - - - - - N Q N Q N S I E F S Y N G W P Q E A E C G Y Q
pt011200_POPTR_    A L F A P P P Q N H A - H Q N D T N C Q K L F F S Q D Q Y P F N A Y A Y G N S N S N L L T - G G E G W V Q - - G C G A G
 
AT1G28160.1     S I T - - - - - - - - - - - - - - - - - - - - - - - S N A E H C D H E L P P L P P - - - S T C F G A E L R I P E T D S Y
pt011200_POPTR_    A A D G P G G S Y E P N N A G S F G V A T E P I Y F S N K D N I - - E L P P L P P D V N S S C Y G S D M - - - - D H G F
 
AT1G28160.1     W N V A H A S I D T F A F E L D - - - - - - - - - - - - - - - G F V D Q N S L G Q S G T E G F N S L P - - - - - - - - -
pt011200_POPTR_    W N D A - - - - G F F G F Q E E Q K N N G N G L E I S G S S L G F - D S N D F G Q H G S L - F E I M P S V S D T V T D E
 
AT1G28160.1     - - - - - - S T F F Y Q
pt011200_POPTR_    L D L G S S S T L Y F -
 
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