fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28310.2 FSSLSALGLGLPHQMS at 168/311 in AT1G28310.1
FSSLSALGLGLPHQMS at 182/325 in AT1G28310.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041506 not found in 353aa AT1G28310.2 1st_1st 0.301810865 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28310.2     ----------MPIISSPNTNPLASMQSKNMIVASS-------------HQQQQQQQPQQP
gm041506_Glyma1 MSANCEKMVAIP----PTTNQWLQVDDHKVLMGSNGGSSNNNKVMEKPGQNQLVQQQQHP
                          :*    *.**   .::.:::::.*.              *:*  ** *:*

AT1G28310.2     QPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK
gm041506_Glyma1 E-TLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVK
                :  ************************************************. *:*****

AT1G28310.2     RPSTATTTTASTVSTTNSSSPNNPH-------QISHFSSMNH-HPLFYGLSDHMSSCNNN
gm041506_Glyma1 RPITSPCSAAIDTASNSSNSSSAPTAAASLQPQIDTASTSNHINPLFYGLPS--SSSDVN
                ** *:. ::*  .::..*.*.. *        **.  *: ** :******..  **.: *

AT1G28310.2     LPMIPSRFSDSSKTCSSSGLESEFLSSGFSSL--SALGLG-----LPHQMSHDHTINGSF
gm041506_Glyma1 LPLF-SRFG------------SRISSSGFDLQLNNALGLGFSSGVLSNEASDNNGYRSGF
                **:: ***.            *.: ****.    .*****     *.:: *.::  ...*

AT1G28310.2     INNSTTNKPFLLSGLFGSSMSS---SSTLLQHP--HKPMNNGGDMLGQ-SHLQTLASLQD
gm041506_Glyma1 GSNN-----MLLSSYTSTTTTTPAMSSLLLQQKFISGGLKNDADSSNTFQHGLSLTSLEQ
                 .*.     :***.  .:: ::   ** ***:      ::*..*  .  .*  :*:**::

AT1G28310.2     LHVGGNN---------EDMKYKEGK-LDQISGNINGFMSSSSSL---DPSNYNNMWNNAS
gm041506_Glyma1 LQIASDHSSEAGMVALKDVKVELGQNNNRLEWNGGAFQSQIQHVGLYDPLLY---WNNSA
                *::..::         :*:* : *:  :::. * ..* *. . :   **  *   ***::

AT1G28310.2     VVNGAWLDPTNNNVGSSLTSLI
gm041506_Glyma1 TALGVWNDQA-ANIGSSVTSLI
                .. *.* * :  *:***:****
BoxShade v3.31 C (beta, 970507) Output
AT1G28310.2     - - - - - - - - - - M P I I S S P N T N P L A S M Q S K N M I V A S S - - - - - - - - - - - - - H Q Q Q Q Q Q Q P Q Q P
gm041506_Glyma1    M S A N C E K M V A I P - - - - P T T N Q W L Q V D D H K V L M G S N G G S S N N N K V M E K P G Q N Q L V Q Q Q Q H P
 
AT1G28310.2     Q P Q L K C P R C D S S N T K F C Y Y N N Y S L S Q P R H F C K A C K R Y W T R G G T L R N V P V G G S Y R K N K R V K
gm041506_Glyma1    E - T L K C P R C D S S N T K F C Y Y N N Y S L S Q P R H F C K A C K R Y W T R G G T L R N V P V G G G C R R N K R V K
 
AT1G28310.2     R P S T A T T T T A S T V S T T N S S S P N N P H - - - - - - - Q I S H F S S M N H - H P L F Y G L S D H M S S C N N N
gm041506_Glyma1    R P I T S P C S A A I D T A S N S S N S S S A P T A A A S L Q P Q I D T A S T S N H I N P L F Y G L P S - - S S S D V N
 
AT1G28310.2     L P M I P S R F S D S S K T C S S S G L E S E F L S S G F S S L - - S A L G L G - - - - - L P H Q M S H D H T I N G S F
gm041506_Glyma1    L P L F - S R F G - - - - - - - - - - - - S R I S S S G F D L Q L N N A L G L G F S S G V L S N E A S D N N G Y R S G F
 
AT1G28310.2     I N N S T T N K P F L L S G L F G S S M S S - - - S S T L L Q H P - - H K P M N N G G D M L G Q - S H L Q T L A S L Q D
gm041506_Glyma1    G S N N - - - - - M L L S S Y T S T T T T T P A M S S L L L Q Q K F I S G G L K N D A D S S N T F Q H G L S L T S L E Q
 
AT1G28310.2     L H V G G N N - - - - - - - - - E D M K Y K E G K - L D Q I S G N I N G F M S S S S S L - - - D P S N Y N N M W N N A S
gm041506_Glyma1    L Q I A S D H S S E A G M V A L K D V K V E L G Q N N N R L E W N G G A F Q S Q I Q H V G L Y D P L L Y - - - W N N S A
 
AT1G28310.2     V V N G A W L D P T N N N V G S S L T S L I
gm041506_Glyma1    T A L G V W N D Q A - A N I G S S V T S L I
 
0