fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041516 RRGIPIDLNEPPPMWL in 162/172 AT1G28360.1 not_1st 0.466453674 II
Pt024746 RRGLPIDLNEPPPLWL in 164/174 AT1G28360.1 not_1st 0.485623003 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G28360.1     MA---STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARF
pt024746_POPTR_ ------MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARS
gm041516_Glyma1 MAPSSSASASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARS
                       :.:** ********************************************** 

AT1G28360.1     LRGIKAKTNF-PSP-----LSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSS
pt024746_POPTR_ LRGAKAKTNF-PSPPSTSGLSFDLN-LPS-----------DPHHHHLHWSSCP-------
gm041516_Glyma1 LRGAKAKTNFPPAPP----LCLDLN-VPS-----------SDH----RW---P-------
                *** ****** *:*     *.:*** :**           . *     *   *       

AT1G28360.1     DHHHQHHRI-----FLRTGVL-NDKTSDYSSTEAPLYFTSSPNTATSSPGYQVV----GF
pt024746_POPTR_ --HLGSHRFGGFGEFLQTGVVFNE--MNLHATEAA----AASGSVAKNEGPGAV---AGT
gm041516_Glyma1 --HHVPPRSLVLSDFLHTAVL-RD--IDPPQQPFP----PAAAVAHRNPHGGAMPVGGGV
                  *    *      **:*.*: .:   :      .    .:.  .  .    .:    * 

AT1G28360.1     PMMNSSPSPVT----VRRGLAIDLNEPPPLWL
pt024746_POPTR_ PAPENVA-PVSFLGMVRRGLPIDLNEPPPLWL
gm041516_Glyma1 QVMEGSP-TASFLGFVRRGIPIDLNEPPPMWL
                   :. . ..:    ****:.********:**
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     M A - - - S T T C A R E V H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R F
pt024746_POPTR_    - - - - - - M A S S R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S
gm041516_Glyma1    M A P S S S A S A S R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S
 
AT1G28360.1     L R G I K A K T N F - P S P - - - - - L S L D L N H L P S A P S A A T A A A N N Q P H Q H Q Q L W F A A P P P V P P S S
pt024746_POPTR_    L R G A K A K T N F - P S P P S T S G L S F D L N - L P S - - - - - - - - - - - D P H H H H L H W S S C P - - - - - - -
gm041516_Glyma1    L R G A K A K T N F P P A P P - - - - L C L D L N - V P S - - - - - - - - - - - S D H - - - - R W - - - P - - - - - - -
 
AT1G28360.1     D H H H Q H H R I - - - - - F L R T G V L - N D K T S D Y S S T E A P L Y F T S S P N T A T S S P G Y Q V V - - - - G F
pt024746_POPTR_    - - H L G S H R F G G F G E F L Q T G V V F N E - - M N L H A T E A A - - - - A A S G S V A K N E G P G A V - - - A G T
gm041516_Glyma1    - - H H V P P R S L V L S D F L H T A V L - R D - - I D P P Q Q P F P - - - - P A A A V A H R N P H G G A M P V G G G V
 
AT1G28360.1     P M M N S S P S P V T - - - - V R R G L A I D L N E P P P L W L
pt024746_POPTR_    P A P E N V A - P V S F L G M V R R G L P I D L N E P P P L W L
gm041516_Glyma1    Q V M E G S P - T A S F L G F V R R G I P I D L N E P P P M W L
 
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